Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17035

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,860,818	+				+0.2
3,860,941	+				+2.1
3,861,054	+				+0.1
3,861,365	+		BPHYT_RS17030	0.69	+0.9
3,861,515	+				+1.8
3,861,515	+				+0.7
3,861,596	+				+0.1
3,862,047	+		BPHYT_RS17035	0.46	-0.6
3,862,099	-		BPHYT_RS17035	0.52	-1.4
3,862,174	-		BPHYT_RS17035	0.60	-1.6
3,862,178	-		BPHYT_RS17035	0.60	+0.4
3,862,191	+		BPHYT_RS17035	0.62	-0.4
3,862,486	-				+1.4
3,862,549	-				+0.3
3,862,646	+		BPHYT_RS17040	0.14	-0.7
3,862,646	+		BPHYT_RS17040	0.14	+0.4
3,862,724	-		BPHYT_RS17040	0.31	+0.8
3,863,230	+				-1.8
3,863,230	+				-1.0
3,863,278	+				-0.2
3,863,279	-				-1.7