Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16905

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,832,804	+		BPHYT_RS16895	0.78	-0.4
3,832,804	+		BPHYT_RS16895	0.78	-0.7
3,832,804	+		BPHYT_RS16895	0.78	+1.1
3,832,804	+		BPHYT_RS16895	0.78	-1.0
3,832,805	-		BPHYT_RS16895	0.78	-0.5
3,832,805	-		BPHYT_RS16895	0.78	-0.1
3,832,805	-		BPHYT_RS16895	0.78	-0.8
3,832,913	+				+0.3
3,832,913	+				-0.1
3,832,913	+				+0.2
3,832,914	-				-0.3
3,833,026	+		BPHYT_RS16900	0.17	+2.2
3,833,026	+		BPHYT_RS16900	0.17	-0.4
3,833,026	+		BPHYT_RS16900	0.17	+0.5
3,833,027	-		BPHYT_RS16900	0.17	+0.2
3,833,027	-		BPHYT_RS16900	0.17	-0.4
3,833,104	+		BPHYT_RS16900	0.32	+0.2
3,833,104	+		BPHYT_RS16900	0.32	+0.5
3,833,104	+		BPHYT_RS16900	0.32	-0.0
3,833,105	-		BPHYT_RS16900	0.32	-0.3
3,833,105	-		BPHYT_RS16900	0.32	-0.4
3,833,107	+		BPHYT_RS16900	0.32	-1.1
3,833,107	+		BPHYT_RS16900	0.32	+0.7
3,833,473	-				-0.6
3,833,521	-				+0.9
3,833,550	+				-1.1
3,833,593	+				-2.8
3,833,670	+		BPHYT_RS16905	0.10	-2.9
3,833,670	+		BPHYT_RS16905	0.10	-1.5
3,833,671	-		BPHYT_RS16905	0.10	+1.4
3,833,675	-		BPHYT_RS16905	0.11	-2.2
3,833,905	-		BPHYT_RS16905	0.39	-1.2
3,834,004	-		BPHYT_RS16905	0.51	-1.3
3,834,004	-		BPHYT_RS16905	0.51	-1.1
3,834,030	+		BPHYT_RS16905	0.54	+0.8
3,834,030	+		BPHYT_RS16905	0.54	-0.6
3,834,030	+		BPHYT_RS16905	0.54	-0.6
3,834,061	-		BPHYT_RS16905	0.58	+1.4
3,834,853	+		BPHYT_RS16910	0.19	-0.2
3,834,853	+		BPHYT_RS16910	0.19	-0.2
3,834,862	+				+0.4
3,834,862	+		BPHYT_RS16910	0.20	+0.7
3,834,862	+		BPHYT_RS16910	0.20	+0.9
3,834,862	+		BPHYT_RS16910	0.20	-1.0
3,834,863	-		BPHYT_RS16910	0.20	-0.1
3,834,863	-		BPHYT_RS16910	0.20	+0.2
3,835,187	+		BPHYT_RS16910	0.50	+0.7
3,835,188	-		BPHYT_RS16910	0.51	-0.1
3,835,188	-		BPHYT_RS16910	0.51	+0.5
3,835,189	+		BPHYT_RS16910	0.51	+1.3
3,835,190	-		BPHYT_RS16910	0.51	+0.6