Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15915

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,611,963	-				-0.4
3,612,657	-				+1.3
3,612,772	+				+2.3
3,612,839	+				+0.1
3,612,874	-				-2.6
3,612,907	-				-1.0
3,612,913	-				-4.3
3,612,913	-				-2.3
3,612,958	-		BPHYT_RS15915	0.12	-5.1
3,612,966	+		BPHYT_RS15915	0.13	-2.3
3,612,966	+		BPHYT_RS15915	0.13	-5.8
3,612,967	-		BPHYT_RS15915	0.13	-5.3
3,612,967	-		BPHYT_RS15915	0.13	-5.2
3,612,967	-		BPHYT_RS15915	0.13	-4.0
3,613,184	+		BPHYT_RS15915	0.36	-0.7
3,613,245	+		BPHYT_RS15915	0.43	-1.5
3,613,281	+		BPHYT_RS15915	0.46	-2.3
3,613,281	+		BPHYT_RS15915	0.46	-3.0
3,613,282	-		BPHYT_RS15915	0.47	+0.0
3,613,350	+		BPHYT_RS15915	0.54	-1.3
3,613,351	-		BPHYT_RS15915	0.54	-2.3
3,613,351	-		BPHYT_RS15915	0.54	-1.7
3,613,351	-		BPHYT_RS15915	0.54	-1.4
3,613,458	+		BPHYT_RS15915	0.65	-5.5
3,613,458	+		BPHYT_RS15915	0.65	-3.4
3,613,512	-		BPHYT_RS15915	0.71	-3.3
3,613,749	+				-2.7
3,613,749	+				-3.7
3,613,749	+				-4.8
3,613,750	-				-4.5
3,613,960	+				-0.1
3,614,122	+				-3.9
3,614,122	+				-3.6
3,614,229	+		BPHYT_RS15920	0.15	-3.9
3,614,296	+		BPHYT_RS15920	0.21	-6.3
3,614,297	-		BPHYT_RS15920	0.21	-2.6
3,614,297	-		BPHYT_RS15920	0.21	-2.3
3,614,297	-		BPHYT_RS15920	0.21	-3.5
3,614,309	-		BPHYT_RS15920	0.22	-3.4
3,614,444	-		BPHYT_RS15920	0.33	-3.1
3,614,446	+		BPHYT_RS15920	0.33	-2.7
3,614,447	-		BPHYT_RS15920	0.33	-2.8
3,614,661	+		BPHYT_RS15920	0.51	-3.3
3,614,662	-		BPHYT_RS15920	0.51	-3.6
3,614,710	+		BPHYT_RS15920	0.55	-3.4
3,614,710	+		BPHYT_RS15920	0.55	-2.8
3,614,711	-		BPHYT_RS15920	0.55	-3.2
3,614,722	+		BPHYT_RS15920	0.56	-4.0