Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15645

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,546,507	-		BPHYT_RS15640	0.45	-4.4
3,546,680	+		BPHYT_RS15640	0.56	-5.9
3,546,681	-		BPHYT_RS15640	0.56	-3.6
3,546,681	-		BPHYT_RS15640	0.56	-0.9
3,546,691	+		BPHYT_RS15640	0.57	-5.1
3,546,806	+		BPHYT_RS15640	0.64	-3.5
3,546,806	+		BPHYT_RS15640	0.64	-4.0
3,546,807	-		BPHYT_RS15640	0.64	-4.3
3,547,101	-		BPHYT_RS15640	0.83	-3.2
3,547,114	-		BPHYT_RS15640	0.83	-1.9
3,547,181	+		BPHYT_RS15640	0.88	-3.5
3,547,185	-		BPHYT_RS15640	0.88	-2.7
3,547,185	-		BPHYT_RS15640	0.88	-5.7
3,547,825	+		BPHYT_RS15645	0.39	-2.3
3,547,825	+		BPHYT_RS15645	0.39	-3.8
3,547,826	-		BPHYT_RS15645	0.40	-3.8
3,547,826	-		BPHYT_RS15645	0.40	-3.7
3,547,826	-		BPHYT_RS15645	0.40	+0.0
3,547,828	-		BPHYT_RS15645	0.40	-3.1
3,547,871	-		BPHYT_RS15645	0.45	-2.5
3,547,931	+		BPHYT_RS15645	0.51	-3.8
3,547,952	-		BPHYT_RS15645	0.54	-3.0
3,548,100	-		BPHYT_RS15645	0.70	-4.3
3,548,100	-		BPHYT_RS15645	0.70	-2.0
3,548,100	-		BPHYT_RS15645	0.70	-3.4
3,548,265	+		BPHYT_RS15645	0.88	-4.7
3,548,311	+				-3.5
3,548,391	+				-4.3
3,548,392	-				-2.8
3,548,631	-		BPHYT_RS15650	0.23	-3.5
3,548,846	-		BPHYT_RS15650	0.42	-4.7
3,548,919	+		BPHYT_RS15650	0.48	-1.4
3,548,919	+		BPHYT_RS15650	0.48	-2.2
3,548,919	+		BPHYT_RS15650	0.48	-3.9
3,548,919	+		BPHYT_RS15650	0.48	-2.6
3,548,919	+		BPHYT_RS15650	0.48	-4.2
3,548,920	-		BPHYT_RS15650	0.48	-2.2
3,548,920	-		BPHYT_RS15650	0.48	-5.5
3,548,920	-		BPHYT_RS15650	0.48	-5.4
3,548,920	-		BPHYT_RS15650	0.48	-1.6
3,549,054	+		BPHYT_RS15650	0.60	-3.8
3,549,055	-		BPHYT_RS15650	0.60	-2.6
3,549,324	+		BPHYT_RS15650	0.84	-4.6
3,549,324	+		BPHYT_RS15650	0.84	-3.7
3,549,325	-		BPHYT_RS15650	0.84	-5.1
3,549,325	-		BPHYT_RS15650	0.84	-1.9
3,549,325	-		BPHYT_RS15650	0.84	-3.3
3,549,325	-		BPHYT_RS15650	0.84	-3.8
3,549,327	+		BPHYT_RS15650	0.84	-6.0
3,549,327	+		BPHYT_RS15650	0.84	-5.3
3,549,328	-		BPHYT_RS15650	0.84	-5.1
3,549,328	-		BPHYT_RS15650	0.84	-6.3
3,549,328	-		BPHYT_RS15650	0.84	-0.5