Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15585

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,535,367	+		BPHYT_RS15580	0.19	+0.5
3,535,368	-		BPHYT_RS15580	0.19	+0.5
3,535,411	+		BPHYT_RS15580	0.23	-0.8
3,535,411	+		BPHYT_RS15580	0.23	-0.4
3,535,411	+		BPHYT_RS15580	0.23	+0.3
3,535,412	-		BPHYT_RS15580	0.23	+2.0
3,535,601	+		BPHYT_RS15580	0.39	-0.4
3,535,601	+		BPHYT_RS15580	0.39	-0.4
3,535,602	-		BPHYT_RS15580	0.39	+0.6
3,535,970	+		BPHYT_RS15580	0.70	-0.3
3,535,970	+		BPHYT_RS15580	0.70	+0.1
3,536,324	+				+0.2
3,536,325	-				+2.1
3,536,345	-				+0.5
3,536,586	-		BPHYT_RS15585	0.51	-0.2
3,536,662	-		BPHYT_RS15585	0.67	+0.3
3,536,662	-		BPHYT_RS15585	0.67	+0.1
3,536,900	-				-1.0
3,536,900	-				-0.7
3,536,911	+				-0.2
3,536,911	+				-0.6
3,536,990	-		BPHYT_RS15590	0.13	+0.7
3,537,298	+		BPHYT_RS15590	0.56	+0.1
3,537,298	+		BPHYT_RS15590	0.56	-1.1
3,537,424	+		BPHYT_RS15590	0.73	+0.9
3,537,424	+		BPHYT_RS15590	0.73	-0.4
3,537,425	-		BPHYT_RS15590	0.74	+0.5
3,537,446	-		BPHYT_RS15590	0.76	-0.3
3,537,572	-				+0.1
3,537,616	-				+0.9
3,537,637	-				+0.1
3,537,637	-				-0.6
3,537,637	-				-3.1
3,537,637	-				-0.6