Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15415

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,498,458	-				-1.0
3,498,458	-				-0.4
3,498,621	+				-2.2
3,498,621	+				-2.9
3,498,621	+				-1.8
3,498,621	+				+0.4
3,498,622	-				+1.5
3,498,742	+				-1.8
3,498,743	-				-0.1
3,498,743	-				-1.2
3,498,746	+				-1.1
3,498,845	+				-0.6
3,498,845	+				-1.1
3,498,846	-				-1.5
3,498,846	-				-0.3
3,498,876	-				+0.1
3,498,876	-				+0.2
3,498,979	+				+0.4
3,498,979	+				-0.4
3,498,997	+				+0.3
3,498,997	+				+0.3
3,498,997	+				+0.6
3,498,997	+				-0.2
3,499,019	+				+0.3
3,499,046	+				+1.2
3,499,117	+				-3.3
3,499,592	-		BPHYT_RS15415	0.31	-0.2
3,499,645	+		BPHYT_RS15415	0.35	-2.2
3,499,645	+		BPHYT_RS15415	0.35	-0.6
3,499,651	+		BPHYT_RS15415	0.35	+0.8
3,499,651	+		BPHYT_RS15415	0.35	+2.4
3,499,651	+		BPHYT_RS15415	0.35	-0.9
3,499,651	+		BPHYT_RS15415	0.35	-0.6
3,499,651	+		BPHYT_RS15415	0.35	+0.1
3,499,651	+		BPHYT_RS15415	0.35	-1.6
3,499,651	+		BPHYT_RS15415	0.35	+0.1
3,499,652	-		BPHYT_RS15415	0.35	-3.6
3,499,652	-		BPHYT_RS15415	0.35	-0.2
3,499,652	-		BPHYT_RS15415	0.35	-0.2
3,499,652	-		BPHYT_RS15415	0.35	-1.6
3,499,653	+		BPHYT_RS15415	0.35	-0.9
3,499,653	+		BPHYT_RS15415	0.35	-0.2
3,499,653	+		BPHYT_RS15415	0.35	+0.8
3,499,653	+		BPHYT_RS15415	0.35	-0.6
3,499,654	-		BPHYT_RS15415	0.35	-2.9
3,499,654	-		BPHYT_RS15415	0.35	-1.5
3,499,654	-		BPHYT_RS15415	0.35	-2.4
3,499,842	+		BPHYT_RS15415	0.47	+0.5
3,499,960	-		BPHYT_RS15415	0.55	+1.2
3,499,960	-		BPHYT_RS15415	0.55	-0.9
3,500,035	-		BPHYT_RS15415	0.60	-1.1
3,500,079	+		BPHYT_RS15415	0.62	+1.4
3,500,079	+		BPHYT_RS15415	0.62	-2.1
3,500,080	-		BPHYT_RS15415	0.62	-2.3
3,500,123	+		BPHYT_RS15415	0.65	-1.7
3,500,145	+		BPHYT_RS15415	0.67	-2.9
3,500,145	+		BPHYT_RS15415	0.67	-0.9
3,500,145	+		BPHYT_RS15415	0.67	-1.9
3,500,146	-		BPHYT_RS15415	0.67	-0.2
3,500,146	-		BPHYT_RS15415	0.67	+1.6
3,500,146	-		BPHYT_RS15415	0.67	+0.4
3,500,146	-		BPHYT_RS15415	0.67	+0.8
3,500,157	+		BPHYT_RS15415	0.67	-1.1
3,500,158	-		BPHYT_RS15415	0.67	-1.6
3,500,158	-		BPHYT_RS15415	0.67	-2.5
3,500,259	+		BPHYT_RS15415	0.74	+0.4
3,500,259	+		BPHYT_RS15415	0.74	-1.6
3,500,259	+		BPHYT_RS15415	0.74	+0.8
3,500,259	+		BPHYT_RS15415	0.74	+0.8
3,500,260	-		BPHYT_RS15415	0.74	-1.5
3,500,260	-		BPHYT_RS15415	0.74	+0.8
3,500,260	-		BPHYT_RS15415	0.74	+0.8
3,500,284	-		BPHYT_RS15415	0.75	-2.0
3,500,376	+		BPHYT_RS15415	0.81	-1.0
3,500,376	+		BPHYT_RS15415	0.81	-2.0
3,500,377	-		BPHYT_RS15415	0.81	-0.7
3,500,377	-		BPHYT_RS15415	0.81	-0.8
3,500,681	+				-0.6
3,500,681	+				-0.2
3,500,695	+				-0.8
3,500,696	-				-0.6
3,500,704	+				+1.5
3,500,782	+				-1.7
3,500,882	+		BPHYT_RS15420	0.23	+0.3
3,501,306	+		BPHYT_RS15420	0.86	+0.6
3,501,306	+		BPHYT_RS15420	0.86	+0.3
3,501,307	-		BPHYT_RS15420	0.86	+0.7
3,501,329	+		BPHYT_RS15420	0.89	+0.2
3,501,330	-		BPHYT_RS15420	0.90	-0.3
3,501,339	-				-1.8
3,501,339	-				-0.4
3,501,481	+				+0.6
3,501,481	+				+0.2
3,501,482	-				-0.4
3,501,482	-				+0.9