Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13980

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,191,721	-		BPHYT_RS13975	0.18	-0.9
3,191,721	-		BPHYT_RS13975	0.18	+0.6
3,191,753	-		BPHYT_RS13975	0.22	-0.0
3,192,095	+		BPHYT_RS13975	0.59	+0.1
3,192,155	-		BPHYT_RS13975	0.65	-1.5
3,192,155	-		BPHYT_RS13975	0.65	-0.6
3,192,307	-		BPHYT_RS13975	0.82	-1.5
3,192,644	+				+0.9
3,192,644	+				-0.2
3,192,645	-				+0.4
3,195,438	+				+0.1
3,195,438	+				+0.4
3,195,438	+				-0.5
3,195,439	-				-0.4
3,195,471	-				+0.5
3,195,471	-				-2.4
3,195,511	-				-0.5
3,195,552	+				-0.1
3,195,552	+				-0.2
3,195,562	+				+0.4
3,195,563	-				-0.7
3,195,596	+				+0.3
3,195,596	+				-0.7
3,195,596	+				-0.6
3,195,596	+				+1.2
3,195,597	-				-0.4
3,195,597	-				-1.3
3,195,644	-				+0.0
3,195,644	-				+0.9
3,195,687	+				+0.3
3,195,836	+		BPHYT_RS13985	0.16	-0.0
3,195,837	-		BPHYT_RS13985	0.16	+0.4
3,195,837	-		BPHYT_RS13985	0.16	-0.5
3,195,837	-		BPHYT_RS13985	0.16	-0.3
3,195,839	+		BPHYT_RS13985	0.16	-0.2
3,195,839	+		BPHYT_RS13985	0.16	-2.3
3,195,840	-		BPHYT_RS13985	0.16	+0.2
3,195,951	-		BPHYT_RS13985	0.25	-3.0
3,196,022	+		BPHYT_RS13985	0.31	-0.6
3,196,196	+		BPHYT_RS13985	0.45	+0.0
3,196,196	+		BPHYT_RS13985	0.45	-1.3
3,196,196	+		BPHYT_RS13985	0.45	+0.2
3,196,197	-		BPHYT_RS13985	0.45	+0.1
3,196,197	-		BPHYT_RS13985	0.45	+0.0
3,196,197	-		BPHYT_RS13985	0.45	-1.2
3,196,197	-		BPHYT_RS13985	0.45	-0.2
3,196,256	+		BPHYT_RS13985	0.50	-0.8