Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13550
Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X |
---|---|---|---|---|---|
remove | |||||
3,090,601 | + | BPHYT_RS13545 | 0.72 | +0.7 | |
3,090,800 | - | BPHYT_RS13545 | 0.81 | +0.3 | |
3,091,749 | - | BPHYT_RS13550 | 0.38 | +0.1 | |
3,091,749 | - | BPHYT_RS13550 | 0.38 | +0.4 | |
3,092,013 | - | BPHYT_RS13550 | 0.60 | +5.3 | |
3,092,025 | - | BPHYT_RS13550 | 0.61 | +1.1 | |
3,092,409 | - | +0.4 | |||
3,093,046 | + | BPHYT_RS13555 | 0.48 | +0.5 | |
3,093,273 | + | BPHYT_RS13555 | 0.68 | +0.7 |
Or see this region's nucleotide sequence