Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13550

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS13545 and BPHYT_RS13550 are separated by 85 nucleotidesBPHYT_RS13550 and BPHYT_RS13555 are separated by 13 nucleotides BPHYT_RS13545: BPHYT_RS13545 - 3-hydroxyadipyl-CoA dehydrogenase (EC 1.1.1.35) (from data), at 3,089,080 to 3,091,200 _RS13545 BPHYT_RS13550: BPHYT_RS13550 - acyl-CoA dehydrogenase, at 3,091,286 to 3,092,494 _RS13550 BPHYT_RS13555: BPHYT_RS13555 - acyl-CoA dehydrogenase, at 3,092,508 to 3,093,635 _RS13555 Position (kb) 3091 3092 3093Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 3090.601 kb on + strand, within BPHYT_RS13545at 3090.800 kb on - strand, within BPHYT_RS13545at 3091.749 kb on - strand, within BPHYT_RS13550at 3091.749 kb on - strand, within BPHYT_RS13550at 3092.013 kb on - strand, within BPHYT_RS13550at 3092.025 kb on - strand, within BPHYT_RS13550at 3092.409 kb on - strandat 3093.046 kb on + strand, within BPHYT_RS13555at 3093.273 kb on + strand, within BPHYT_RS13555

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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3,090,601 + BPHYT_RS13545 0.72 +0.7
3,090,800 - BPHYT_RS13545 0.81 +0.3
3,091,749 - BPHYT_RS13550 0.38 +0.1
3,091,749 - BPHYT_RS13550 0.38 +0.4
3,092,013 - BPHYT_RS13550 0.60 +5.3
3,092,025 - BPHYT_RS13550 0.61 +1.1
3,092,409 - +0.4
3,093,046 + BPHYT_RS13555 0.48 +0.5
3,093,273 + BPHYT_RS13555 0.68 +0.7

Or see this region's nucleotide sequence