Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12985

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,968,737	+		BPHYT_RS12980	0.82	-0.6
2,968,800	+		BPHYT_RS12980	0.83	+1.2
2,968,843	+		BPHYT_RS12980	0.84	-0.3
2,968,844	-		BPHYT_RS12980	0.84	+0.8
2,968,906	-		BPHYT_RS12980	0.85	-0.5
2,969,170	+				+0.3
2,969,171	-				-0.1
2,969,542	-				+0.3
2,969,544	-				-2.9
2,969,671	+				-3.4
2,969,671	+				-0.5
2,969,672	-				-1.0
2,969,688	+				-1.6
2,969,880	+		BPHYT_RS12985	0.23	-2.1
2,969,970	+		BPHYT_RS12985	0.30	-2.0
2,970,316	+		BPHYT_RS12985	0.55	-0.1
2,970,487	+		BPHYT_RS12985	0.67	-1.2
2,970,899	-				-3.4
2,970,950	+				+0.2
2,970,951	-				+1.1
2,970,951	-				-0.5
2,970,951	-				-0.8
2,970,951	-				-0.7
2,970,951	-				-0.8
2,970,954	+				-0.2
2,970,954	+				-0.0
2,970,955	-				-0.2
2,970,955	-				-2.2
2,970,955	-				+0.6
2,971,005	+				-1.4
2,971,005	+				+0.7
2,971,087	+		BPHYT_RS12990	0.30	-2.3
2,971,088	-		BPHYT_RS12990	0.31	-1.6
2,971,249	+				+0.1
2,971,249	+				-0.5
2,971,270	+				-0.2
2,971,270	+				+0.7
2,971,275	+				-0.6
2,971,275	+				-0.9
2,971,275	+				-0.6
2,971,276	-				-0.0
2,971,293	+				+0.2