Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12840

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,925,705	-		BPHYT_RS12835	0.49	-1.6
2,926,637	-				-0.7
2,926,637	-				-2.2
2,927,252	-		BPHYT_RS12840	0.23	-1.0
2,927,586	-		BPHYT_RS12840	0.35	-1.6
2,927,586	-		BPHYT_RS12840	0.35	-1.0
2,927,586	-		BPHYT_RS12840	0.35	-2.5
2,927,674	+		BPHYT_RS12840	0.39	-0.4
2,928,202	+		BPHYT_RS12840	0.58	+0.6
2,928,203	-		BPHYT_RS12840	0.58	-2.7
2,928,680	-				+2.9
2,928,680	-		BPHYT_RS12840	0.76	+0.5
2,928,866	-		BPHYT_RS12840	0.83	-0.8
2,929,130	-				-2.4
2,929,300	+				-2.6
2,929,348	+				-0.9
2,929,349	-				-0.4
2,929,412	+				+0.6
2,929,544	-				-0.1
2,929,578	+				-0.1
2,929,721	-				-2.7
2,929,822	+				-4.1
2,929,822	+				-2.9
2,929,979	+		BPHYT_RS12845	0.15	-3.2
2,929,980	-		BPHYT_RS12845	0.15	-1.7
2,929,980	-		BPHYT_RS12845	0.15	-4.4
2,929,980	-				-0.1
2,929,980	-		BPHYT_RS12845	0.15	-2.9
2,929,980	-		BPHYT_RS12845	0.15	-3.8
2,929,980	-		BPHYT_RS12845	0.15	-1.9
2,929,992	-		BPHYT_RS12845	0.15	-3.5
2,929,992	-		BPHYT_RS12845	0.15	-2.7
2,930,117	-		BPHYT_RS12845	0.20	+0.1
2,930,147	+		BPHYT_RS12845	0.21	-3.6
2,930,147	+		BPHYT_RS12845	0.21	-4.4
2,930,148	-		BPHYT_RS12845	0.21	-3.9
2,930,148	-		BPHYT_RS12845	0.21	-4.9
2,930,169	-		BPHYT_RS12845	0.22	-3.5