Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12785

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,914,005	-				-0.4
2,914,127	-		BPHYT_RS12785	0.17	-1.8
2,914,346	-		BPHYT_RS12785	0.58	-0.5
2,914,374	-		BPHYT_RS12785	0.64	-0.4
2,914,567	-				-1.7
2,914,567	-				-2.3
2,914,567	-				+0.7
2,914,567	-				-1.1
2,914,567	-				-2.9
2,914,662	+				-0.7
2,914,662	+				+1.0
2,914,662	+				+0.0
2,914,663	-				+0.3
2,914,701	+				-0.4
2,914,701	+				-0.8
2,914,702	-				-0.3
2,914,702	-				+0.4
2,914,702	-				+0.7
2,914,702	-				+0.6
2,915,002	-		BPHYT_RS12790	0.61	+0.1
2,915,241	+				+0.3
2,915,259	+				+0.7
2,915,260	-				+0.2
2,915,347	+				-0.6
2,915,347	+				-0.2
2,915,348	-				+0.6
2,915,429	-		BPHYT_RS12795	0.35	+0.4
2,915,513	+		BPHYT_RS12795	0.70	+0.6
2,915,513	+		BPHYT_RS12795	0.70	-0.2
2,915,514	-		BPHYT_RS12795	0.70	+0.4
2,915,514	-		BPHYT_RS12795	0.70	-0.2
2,915,514	-		BPHYT_RS12795	0.70	-0.7
2,915,521	+		BPHYT_RS12795	0.73	-2.1
2,915,521	+		BPHYT_RS12795	0.73	+0.2
2,915,521	+		BPHYT_RS12795	0.73	-1.4
2,915,521	+		BPHYT_RS12795	0.73	+0.1
2,915,522	-		BPHYT_RS12795	0.73	-1.0
2,915,522	-		BPHYT_RS12795	0.73	-0.2
2,915,522	-		BPHYT_RS12795	0.73	-1.5