Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10240

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10230 and BPHYT_RS10240 are separated by 875 nucleotidesBPHYT_RS10240 and BPHYT_RS10245 are separated by 116 nucleotides BPHYT_RS10230: BPHYT_RS10230 - hypothetical protein, at 2,327,951 to 2,328,382 _RS10230 BPHYT_RS10240: BPHYT_RS10240 - translation initiation inhibitor, at 2,329,258 to 2,329,551 _RS10240 BPHYT_RS10245: BPHYT_RS10245 - import inner membrane translocase subunit Tim44, at 2,329,668 to 2,330,630 _RS10245 Position (kb) 2329 2330Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2329.178 kb on - strandat 2329.390 kb on + strand, within BPHYT_RS10240at 2329.835 kb on + strand, within BPHYT_RS10245at 2329.835 kb on + strand, within BPHYT_RS10245

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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2,329,178 - +2.1
2,329,390 + BPHYT_RS10240 0.45 -2.8
2,329,835 + BPHYT_RS10245 0.17 -0.8
2,329,835 + BPHYT_RS10245 0.17 -0.6

Or see this region's nucleotide sequence