Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10100

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,299,327	+		BPHYT_RS10095	0.50	-1.4
2,299,844	-				-2.9
2,300,103	+				-3.6
2,300,922	-		BPHYT_RS10100	0.48	-3.9
2,301,050	-		BPHYT_RS10100	0.54	-1.9
2,301,154	-		BPHYT_RS10100	0.60	-1.8
2,301,583	-		BPHYT_RS10100	0.83	-4.8
2,301,583	-		BPHYT_RS10100	0.83	-1.9
2,301,583	-		BPHYT_RS10100	0.83	-2.7
2,301,624	+		BPHYT_RS10100	0.85	-2.9
2,301,912	+				-3.1
2,302,048	-				-0.1
2,302,053	+				-4.1
2,302,195	+				+1.4
2,302,614	-		BPHYT_RS10105	0.47	+0.3
2,302,683	+		BPHYT_RS10105	0.54	+0.7
2,302,684	-		BPHYT_RS10105	0.54	+0.6
2,302,684	-		BPHYT_RS10105	0.54	-0.4
2,302,687	+		BPHYT_RS10105	0.55	-0.3
2,302,688	-		BPHYT_RS10105	0.55	+0.0
2,302,780	+		BPHYT_RS10105	0.65	-1.1
2,302,781	-		BPHYT_RS10105	0.65	-0.4