Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09580

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,172,959	+				-0.1
2,173,592	+				-0.1
2,173,593	-				-0.0
2,173,607	-				+0.2
2,173,631	-				+0.6
2,173,827	-		BPHYT_RS09580	0.13	-0.4
2,173,878	-		BPHYT_RS09580	0.16	-0.3
2,174,058	-		BPHYT_RS09580	0.29	+1.1
2,174,058	-		BPHYT_RS09580	0.29	+0.6
2,175,167	+				+0.7
2,175,167	+				+1.1
2,175,260	+				-2.8
2,175,261	-				+0.0
2,175,267	-				-2.1
2,175,267	-				+1.7
2,175,286	-				+0.0
2,175,286	-				+0.2
2,175,413	+		BPHYT_RS09585	0.16	-0.6
2,175,621	+				-1.3
2,175,715	+		BPHYT_RS09585	0.88	-0.3
2,175,832	+				-0.9