Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09145

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,068,213	-		BPHYT_RS09140	0.62	+0.4
2,068,455	+				-0.2
2,068,690	+				+1.1
2,068,691	-				-0.7
2,068,700	+				+0.1
2,068,800	+				-2.0
2,068,800	+				+0.2
2,068,800	+				-1.5
2,068,800	+				-0.3
2,068,801	-				+0.7
2,068,801	-				-0.4
2,068,801	-				-0.6
2,068,801	-				-1.3
2,068,801	-				-0.3
2,068,801	-				+0.6
2,068,801	-				+0.8
2,068,848	+				-2.1
2,068,849	-				-0.4
2,068,849	-				+0.5
2,068,849	-				+0.2
2,068,876	-				-0.7
2,068,983	-				-0.3
2,069,063	+				-0.6
2,069,063	+				-1.8
2,069,063	+				-0.1
2,069,064	-				-1.0
2,069,081	-				-0.9
2,069,316	+				-1.8
2,069,583	-		BPHYT_RS09145	0.22	-0.2
2,069,583	-		BPHYT_RS09145	0.22	-0.9
2,069,907	-		BPHYT_RS09145	0.40	+0.2
2,069,975	+		BPHYT_RS09145	0.44	-1.3
2,069,976	-		BPHYT_RS09145	0.44	-1.5
2,070,082	+		BPHYT_RS09145	0.49	-0.6
2,070,440	+		BPHYT_RS09145	0.69	-2.3
2,070,440	+		BPHYT_RS09145	0.69	-2.4
2,070,440	+		BPHYT_RS09145	0.69	-2.2
2,070,440	+		BPHYT_RS09145	0.69	-0.7
2,070,441	-		BPHYT_RS09145	0.69	-1.2
2,070,455	+		BPHYT_RS09145	0.70	-0.8
2,070,456	-		BPHYT_RS09145	0.70	-0.3
2,070,495	-		BPHYT_RS09145	0.72	-0.0
2,070,533	+		BPHYT_RS09145	0.74	-0.6
2,070,533	+		BPHYT_RS09145	0.74	-1.6
2,070,533	+		BPHYT_RS09145	0.74	-2.5
2,070,533	+		BPHYT_RS09145	0.74	-1.3
2,070,533	+		BPHYT_RS09145	0.74	-1.1
2,070,533	+		BPHYT_RS09145	0.74	-1.5
2,070,533	+		BPHYT_RS09145	0.74	-1.0
2,070,533	+		BPHYT_RS09145	0.74	-1.0
2,070,533	+		BPHYT_RS09145	0.74	-1.7
2,070,533	+		BPHYT_RS09145	0.74	-2.5
2,070,533	+		BPHYT_RS09145	0.74	-3.3
2,070,534	-		BPHYT_RS09145	0.74	-1.4
2,070,534	-		BPHYT_RS09145	0.74	-1.3
2,070,553	+		BPHYT_RS09145	0.75	-2.7
2,070,553	+		BPHYT_RS09145	0.75	-0.8
2,070,554	-		BPHYT_RS09145	0.75	+0.2
2,070,647	+		BPHYT_RS09145	0.80	-1.6
2,070,647	+		BPHYT_RS09145	0.80	-2.1
2,070,986	+				-2.2
2,070,986	+				-0.3
2,070,986	+				-2.1
2,070,986	+				-2.5
2,071,004	+				+0.5
2,071,085	+				+0.0
2,071,085	+				-0.2
2,071,085	+				+0.8
2,071,323	+		BPHYT_RS09150	0.14	-0.2
2,071,606	+		BPHYT_RS09150	0.38	+1.5
2,071,615	+		BPHYT_RS09150	0.39	+0.1
2,071,987	+		BPHYT_RS09150	0.71	-0.2
2,071,987	+		BPHYT_RS09150	0.71	-0.4
2,071,987	+		BPHYT_RS09150	0.71	-0.1