Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08040

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08035 and BPHYT_RS08040 are separated by 393 nucleotidesBPHYT_RS08040 and BPHYT_RS08045 are separated by 369 nucleotides BPHYT_RS08035: BPHYT_RS08035 - LysR family transcriptional regulator, at 1,831,227 to 1,832,129 _RS08035 BPHYT_RS08040: BPHYT_RS08040 - aspartate aminotransferase, at 1,832,523 to 1,833,749 _RS08040 BPHYT_RS08045: BPHYT_RS08045 - condensin subunit ScpB, at 1,834,119 to 1,835,303 _RS08045 Position (kb) 1832 1833 1834Strain fitness (log2 ratio) -1 0 1 2 3at 1831.559 kb on - strand, within BPHYT_RS08035at 1831.559 kb on - strand, within BPHYT_RS08035at 1831.587 kb on + strand, within BPHYT_RS08035at 1831.587 kb on + strand, within BPHYT_RS08035at 1831.589 kb on + strand, within BPHYT_RS08035at 1831.592 kb on - strand, within BPHYT_RS08035at 1832.127 kb on + strandat 1832.127 kb on + strandat 1832.242 kb on - strandat 1832.336 kb on + strandat 1832.337 kb on - strandat 1832.337 kb on - strandat 1832.466 kb on + strandat 1832.466 kb on + strandat 1832.472 kb on - strandat 1832.472 kb on - strandat 1832.730 kb on + strand, within BPHYT_RS08040at 1832.730 kb on + strand, within BPHYT_RS08040at 1832.730 kb on + strand, within BPHYT_RS08040at 1833.156 kb on + strand, within BPHYT_RS08040at 1833.157 kb on - strand, within BPHYT_RS08040at 1833.168 kb on + strand, within BPHYT_RS08040at 1833.168 kb on + strand, within BPHYT_RS08040at 1833.168 kb on + strand, within BPHYT_RS08040at 1833.169 kb on - strand, within BPHYT_RS08040at 1833.172 kb on - strand, within BPHYT_RS08040at 1833.537 kb on + strand, within BPHYT_RS08040at 1833.781 kb on + strandat 1833.781 kb on + strandat 1833.781 kb on + strandat 1833.781 kb on + strandat 1833.922 kb on + strandat 1834.738 kb on + strand, within BPHYT_RS08045

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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1,831,559 - BPHYT_RS08035 0.37 +0.7
1,831,559 - BPHYT_RS08035 0.37 -0.5
1,831,587 + BPHYT_RS08035 0.40 +0.0
1,831,587 + BPHYT_RS08035 0.40 +0.4
1,831,589 + BPHYT_RS08035 0.40 +0.2
1,831,592 - BPHYT_RS08035 0.40 -0.2
1,832,127 + +0.7
1,832,127 + -0.1
1,832,242 - +0.5
1,832,336 + -0.3
1,832,337 - -0.5
1,832,337 - -0.6
1,832,466 + -1.0
1,832,466 + -0.4
1,832,472 - +0.6
1,832,472 - +0.2
1,832,730 + BPHYT_RS08040 0.17 -0.5
1,832,730 + BPHYT_RS08040 0.17 -0.3
1,832,730 + BPHYT_RS08040 0.17 -0.2
1,833,156 + BPHYT_RS08040 0.52 -1.1
1,833,157 - BPHYT_RS08040 0.52 -1.1
1,833,168 + BPHYT_RS08040 0.53 -1.1
1,833,168 + BPHYT_RS08040 0.53 -0.9
1,833,168 + BPHYT_RS08040 0.53 -0.6
1,833,169 - BPHYT_RS08040 0.53 +0.4
1,833,172 - BPHYT_RS08040 0.53 -1.1
1,833,537 + BPHYT_RS08040 0.83 -0.0
1,833,781 + -0.8
1,833,781 + -0.6
1,833,781 + +1.4
1,833,781 + -0.6
1,833,922 + +0.6
1,834,738 + BPHYT_RS08045 0.52 +3.4

Or see this region's nucleotide sequence