Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS08035 and BPHYT_RS08040 are separated by 393 nucleotides BPHYT_RS08040 and BPHYT_RS08045 are separated by 369 nucleotides
BPHYT_RS08035: BPHYT_RS08035 - LysR family transcriptional regulator, at 1,831,227 to 1,832,129
_RS08035
BPHYT_RS08040: BPHYT_RS08040 - aspartate aminotransferase, at 1,832,523 to 1,833,749
_RS08040
BPHYT_RS08045: BPHYT_RS08045 - condensin subunit ScpB, at 1,834,119 to 1,835,303
_RS08045
Position (kb)
1832
1833
1834 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1831.559 kb on - strand, within BPHYT_RS08035 at 1831.559 kb on - strand, within BPHYT_RS08035 at 1831.587 kb on + strand, within BPHYT_RS08035 at 1831.587 kb on + strand, within BPHYT_RS08035 at 1831.589 kb on + strand, within BPHYT_RS08035 at 1831.592 kb on - strand, within BPHYT_RS08035 at 1832.127 kb on + strand at 1832.127 kb on + strand at 1832.242 kb on - strand at 1832.336 kb on + strand at 1832.337 kb on - strand at 1832.337 kb on - strand at 1832.466 kb on + strand at 1832.466 kb on + strand at 1832.472 kb on - strand at 1832.472 kb on - strand at 1832.730 kb on + strand, within BPHYT_RS08040 at 1832.730 kb on + strand, within BPHYT_RS08040 at 1832.730 kb on + strand, within BPHYT_RS08040 at 1833.156 kb on + strand, within BPHYT_RS08040 at 1833.157 kb on - strand, within BPHYT_RS08040 at 1833.168 kb on + strand, within BPHYT_RS08040 at 1833.168 kb on + strand, within BPHYT_RS08040 at 1833.168 kb on + strand, within BPHYT_RS08040 at 1833.169 kb on - strand, within BPHYT_RS08040 at 1833.172 kb on - strand, within BPHYT_RS08040 at 1833.537 kb on + strand, within BPHYT_RS08040 at 1833.781 kb on + strand at 1833.781 kb on + strand at 1833.781 kb on + strand at 1833.781 kb on + strand at 1833.922 kb on + strand at 1834.738 kb on + strand, within BPHYT_RS08045
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 1,831,559 - BPHYT_RS08035 0.37 +0.7 1,831,559 - BPHYT_RS08035 0.37 -0.5 1,831,587 + BPHYT_RS08035 0.40 +0.0 1,831,587 + BPHYT_RS08035 0.40 +0.4 1,831,589 + BPHYT_RS08035 0.40 +0.2 1,831,592 - BPHYT_RS08035 0.40 -0.2 1,832,127 + +0.7 1,832,127 + -0.1 1,832,242 - +0.5 1,832,336 + -0.3 1,832,337 - -0.5 1,832,337 - -0.6 1,832,466 + -1.0 1,832,466 + -0.4 1,832,472 - +0.6 1,832,472 - +0.2 1,832,730 + BPHYT_RS08040 0.17 -0.5 1,832,730 + BPHYT_RS08040 0.17 -0.3 1,832,730 + BPHYT_RS08040 0.17 -0.2 1,833,156 + BPHYT_RS08040 0.52 -1.1 1,833,157 - BPHYT_RS08040 0.52 -1.1 1,833,168 + BPHYT_RS08040 0.53 -1.1 1,833,168 + BPHYT_RS08040 0.53 -0.9 1,833,168 + BPHYT_RS08040 0.53 -0.6 1,833,169 - BPHYT_RS08040 0.53 +0.4 1,833,172 - BPHYT_RS08040 0.53 -1.1 1,833,537 + BPHYT_RS08040 0.83 -0.0 1,833,781 + -0.8 1,833,781 + -0.6 1,833,781 + +1.4 1,833,781 + -0.6 1,833,922 + +0.6 1,834,738 + BPHYT_RS08045 0.52 +3.4
Or see this region's nucleotide sequence