Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08040

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,831,559	-		BPHYT_RS08035	0.37	+0.7
1,831,559	-		BPHYT_RS08035	0.37	-0.5
1,831,587	+		BPHYT_RS08035	0.40	+0.0
1,831,587	+		BPHYT_RS08035	0.40	+0.4
1,831,589	+		BPHYT_RS08035	0.40	+0.2
1,831,592	-		BPHYT_RS08035	0.40	-0.2
1,832,127	+				+0.7
1,832,127	+				-0.1
1,832,242	-				+0.5
1,832,336	+				-0.3
1,832,337	-				-0.5
1,832,337	-				-0.6
1,832,466	+				-1.0
1,832,466	+				-0.4
1,832,472	-				+0.6
1,832,472	-				+0.2
1,832,730	+		BPHYT_RS08040	0.17	-0.5
1,832,730	+		BPHYT_RS08040	0.17	-0.3
1,832,730	+		BPHYT_RS08040	0.17	-0.2
1,833,156	+		BPHYT_RS08040	0.52	-1.1
1,833,157	-		BPHYT_RS08040	0.52	-1.1
1,833,168	+		BPHYT_RS08040	0.53	-1.1
1,833,168	+		BPHYT_RS08040	0.53	-0.9
1,833,168	+		BPHYT_RS08040	0.53	-0.6
1,833,169	-		BPHYT_RS08040	0.53	+0.4
1,833,172	-		BPHYT_RS08040	0.53	-1.1
1,833,537	+		BPHYT_RS08040	0.83	-0.0
1,833,781	+				-0.8
1,833,781	+				-0.6
1,833,781	+				+1.4
1,833,781	+				-0.6
1,833,922	+				+0.6
1,834,738	+		BPHYT_RS08045	0.52	+3.4