Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07770

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,768,172	+				-0.3
1,768,172	+				-1.1
1,768,172	+				-0.1
1,768,172	+				+0.3
1,768,173	-				+1.1
1,768,173	-				+1.0
1,768,173	-				+0.0
1,768,173	-				-2.1
1,768,173	-				-0.3
1,768,429	+		BPHYT_RS07765	0.26	+0.7
1,768,430	-		BPHYT_RS07765	0.26	+0.1
1,768,431	+		BPHYT_RS07765	0.26	+0.5
1,768,432	-		BPHYT_RS07765	0.26	-0.4
1,768,432	-		BPHYT_RS07765	0.26	+0.5
1,768,435	+		BPHYT_RS07765	0.27	+0.2
1,768,436	-		BPHYT_RS07765	0.27	+1.0
1,768,436	-		BPHYT_RS07765	0.27	+0.1
1,768,478	-		BPHYT_RS07765	0.34	+0.6
1,768,478	-		BPHYT_RS07765	0.34	+0.3
1,768,498	-		BPHYT_RS07765	0.38	+1.2
1,768,549	+		BPHYT_RS07765	0.47	-2.0
1,768,558	+		BPHYT_RS07765	0.48	+0.1
1,768,694	+		BPHYT_RS07765	0.73	-0.3
1,768,760	-		BPHYT_RS07765	0.84	-0.1
1,768,800	+				-0.4
1,768,875	-				+1.8
1,769,223	+		BPHYT_RS07770	0.55	+1.8
1,769,224	-		BPHYT_RS07770	0.55	+1.0
1,769,260	+		BPHYT_RS07770	0.63	+0.2
1,769,479	+				-1.8
1,769,480	-				+0.9
1,769,603	-				+0.0
1,769,616	-				-0.4
1,769,616	-				-0.6
1,769,741	+				-2.3