Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07690

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07680 and BPHYT_RS07685 are separated by 81 nucleotidesBPHYT_RS07685 and BPHYT_RS07690 are separated by 25 nucleotidesBPHYT_RS07690 and BPHYT_RS07695 are separated by 141 nucleotides BPHYT_RS07680: BPHYT_RS07680 - ABC transporter for L-Arginine, permease component 1 (from data), at 1,747,645 to 1,748,358 _RS07680 BPHYT_RS07685: BPHYT_RS07685 - ABC transporter for L-Arginine, putative ATPase component (from data), at 1,748,440 to 1,749,231 _RS07685 BPHYT_RS07690: BPHYT_RS07690 - AraC family transcriptional regulator, at 1,749,257 to 1,750,306 _RS07690 BPHYT_RS07695: BPHYT_RS07695 - acetylornithine aminotransferase, at 1,750,448 to 1,751,683 _RS07695 Position (kb) 1749 1750 1751Strain fitness (log2 ratio) -2 -1 0 1at 1748.273 kb on - strand, within BPHYT_RS07680at 1748.336 kb on - strandat 1749.230 kb on - strandat 1749.533 kb on + strand, within BPHYT_RS07690at 1750.055 kb on + strand, within BPHYT_RS07690at 1750.059 kb on - strand, within BPHYT_RS07690at 1750.173 kb on - strand, within BPHYT_RS07690at 1750.362 kb on + strandat 1750.362 kb on + strandat 1750.363 kb on - strandat 1750.363 kb on - strandat 1750.411 kb on + strandat 1750.411 kb on + strandat 1750.418 kb on - strandat 1750.420 kb on + strandat 1750.420 kb on + strandat 1750.835 kb on + strand, within BPHYT_RS07695

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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1,748,273 - BPHYT_RS07680 0.88 +1.0
1,748,336 - +0.6
1,749,230 - -0.0
1,749,533 + BPHYT_RS07690 0.26 +1.4
1,750,055 + BPHYT_RS07690 0.76 +0.9
1,750,059 - BPHYT_RS07690 0.76 +1.0
1,750,173 - BPHYT_RS07690 0.87 +0.1
1,750,362 + +0.2
1,750,362 + +0.9
1,750,363 - -0.2
1,750,363 - -0.5
1,750,411 + +1.2
1,750,411 + +0.2
1,750,418 - +0.3
1,750,420 + -2.5
1,750,420 + +0.2
1,750,835 + BPHYT_RS07695 0.31 +1.0

Or see this region's nucleotide sequence