Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07075

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07070 and BPHYT_RS07075 are separated by 10 nucleotidesBPHYT_RS07075 and BPHYT_RS07080 are separated by 71 nucleotides BPHYT_RS07070: BPHYT_RS07070 - transcriptional regulator, at 1,598,927 to 1,599,838 _RS07070 BPHYT_RS07075: BPHYT_RS07075 - glyoxalase/bleomycin resistance protein/dioxygenase, at 1,599,849 to 1,600,259 _RS07075 BPHYT_RS07080: BPHYT_RS07080 - glutathione S-transferase, at 1,600,331 to 1,601,341 _RS07080 Position (kb) 1599 1600 1601Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1599.119 kb on + strand, within BPHYT_RS07070at 1599.120 kb on - strand, within BPHYT_RS07070at 1599.432 kb on - strand, within BPHYT_RS07070at 1599.495 kb on - strand, within BPHYT_RS07070at 1599.556 kb on - strand, within BPHYT_RS07070at 1599.604 kb on + strand, within BPHYT_RS07070at 1599.604 kb on + strand, within BPHYT_RS07070at 1599.650 kb on + strand, within BPHYT_RS07070at 1599.737 kb on + strand, within BPHYT_RS07070at 1599.738 kb on - strand, within BPHYT_RS07070at 1600.027 kb on + strand, within BPHYT_RS07075at 1600.336 kb on + strandat 1600.459 kb on - strand, within BPHYT_RS07080at 1600.728 kb on + strand, within BPHYT_RS07080at 1601.170 kb on - strand, within BPHYT_RS07080

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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1,599,119 + BPHYT_RS07070 0.21 -1.4
1,599,120 - BPHYT_RS07070 0.21 +1.9
1,599,432 - BPHYT_RS07070 0.55 +3.0
1,599,495 - BPHYT_RS07070 0.62 +0.1
1,599,556 - BPHYT_RS07070 0.69 -0.2
1,599,604 + BPHYT_RS07070 0.74 +0.7
1,599,604 + BPHYT_RS07070 0.74 -0.2
1,599,650 + BPHYT_RS07070 0.79 -1.4
1,599,737 + BPHYT_RS07070 0.89 +0.2
1,599,738 - BPHYT_RS07070 0.89 -0.1
1,600,027 + BPHYT_RS07075 0.43 -2.0
1,600,336 + +0.3
1,600,459 - BPHYT_RS07080 0.13 +0.5
1,600,728 + BPHYT_RS07080 0.39 +0.4
1,601,170 - BPHYT_RS07080 0.83 +0.5

Or see this region's nucleotide sequence