Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06555

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,486,931	+		BPHYT_RS06545	0.86	-3.0
1,486,943	+		BPHYT_RS06545	0.87	-4.5
1,486,943	+		BPHYT_RS06545	0.87	-2.1
1,486,943	+		BPHYT_RS06545	0.87	-3.8
1,486,943	+		BPHYT_RS06545	0.87	-4.3
1,487,166	+				+0.5
1,487,363	+		BPHYT_RS06550	0.16	-1.5
1,487,599	+		BPHYT_RS06550	0.64	-0.4
1,487,701	+		BPHYT_RS06550	0.85	-0.4
1,487,818	+				-0.1
1,487,840	+				+0.9
1,487,840	+				+0.3
1,487,840	+				-0.8
1,487,840	+				+0.9
1,487,840	+				-0.5
1,487,841	-				-2.9
1,487,841	-				-3.5
1,487,841	-				-2.9
1,487,841	-				-3.7
1,487,841	-				-1.6
1,487,842	+				+0.3
1,487,842	+				-1.9
1,487,842	+				-0.1
1,487,842	+				+0.1
1,487,842	+				-0.7
1,487,843	-				-3.1
1,487,843	-				-3.6
1,488,157	+		BPHYT_RS06555	0.26	-4.1
1,488,158	-		BPHYT_RS06555	0.26	-2.3
1,488,229	+		BPHYT_RS06555	0.33	-5.6
1,488,230	-		BPHYT_RS06555	0.33	-6.0
1,488,310	+		BPHYT_RS06555	0.41	-2.5
1,488,544	+		BPHYT_RS06555	0.64	-1.8
1,488,545	-		BPHYT_RS06555	0.64	-4.2
1,488,562	+		BPHYT_RS06555	0.66	-2.5
1,488,562	+		BPHYT_RS06555	0.66	-6.0
1,488,634	+		BPHYT_RS06555	0.73	-1.7
1,488,749	-		BPHYT_RS06555	0.84	-4.0
1,488,908	-				-0.8
1,488,908	-				-0.7
1,488,908	-				-1.5
1,488,947	+				-0.5