Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06410

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,458,390	+		BPHYT_RS06405	0.70	-3.2
1,458,391	-		BPHYT_RS06405	0.70	-2.0
1,458,427	-		BPHYT_RS06405	0.72	-1.8
1,458,699	+				-2.7
1,458,700	-				-4.7
1,458,700	-				-2.5
1,458,776	+				+1.4
1,458,776	+				+1.4
1,458,801	+				-1.2
1,458,810	+				+0.8
1,459,058	+				-2.2
1,459,059	-				+0.2
1,459,493	-		BPHYT_RS06410	0.63	+0.4
1,459,516	+		BPHYT_RS06410	0.66	-1.8
1,459,569	-		BPHYT_RS06410	0.74	-2.1
1,459,725	-				-0.1
1,459,764	+				-1.6
1,459,801	-				+0.5
1,460,172	+				-0.2
1,460,173	-				+1.5
1,460,300	+				+0.2
1,460,300	+				+0.5
1,460,300	+				+0.0
1,460,300	+				-2.1
1,460,301	-				-0.4
1,460,301	-				+1.6
1,460,301	-				-0.1
1,460,301	-				+0.2
1,460,339	+		BPHYT_RS06415	0.14	+0.2
1,460,540	+		BPHYT_RS06415	0.45	-0.5
1,460,754	-		BPHYT_RS06415	0.78	+0.5