Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06060

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,377,672	-		BPHYT_RS06055	0.30	+0.2
1,377,690	-		BPHYT_RS06055	0.32	-0.3
1,378,061	+		BPHYT_RS06055	0.63	+0.1
1,378,299	-		BPHYT_RS06055	0.84	-0.9
1,378,367	+		BPHYT_RS06055	0.89	-0.3
1,378,370	+		BPHYT_RS06055	0.90	-0.8
1,378,370	+		BPHYT_RS06055	0.90	+1.7
1,378,371	-		BPHYT_RS06055	0.90	+0.1
1,378,371	-		BPHYT_RS06055	0.90	-0.1
1,378,576	+				-0.4
1,378,576	+				-1.3
1,378,576	+				+0.5
1,378,949	+		BPHYT_RS06060	0.37	-1.1
1,378,949	+		BPHYT_RS06060	0.37	-3.0
1,378,949	+		BPHYT_RS06060	0.37	+0.5
1,378,950	-		BPHYT_RS06060	0.38	+0.1
1,378,950	-		BPHYT_RS06060	0.38	+1.0
1,379,063	+		BPHYT_RS06060	0.51	-1.5
1,379,195	+		BPHYT_RS06060	0.67	+1.1
1,379,195	+		BPHYT_RS06060	0.67	+1.8
1,379,195	+		BPHYT_RS06060	0.67	+0.7
1,379,195	+		BPHYT_RS06060	0.67	+0.7
1,379,196	-		BPHYT_RS06060	0.67	+0.2
1,379,510	-				+0.0
1,379,510	-				+2.4
1,379,512	-				+0.0
1,379,512	-				-0.6
1,379,512	-				-0.3
1,379,853	-				-0.5
1,379,858	+				-0.2
1,379,859	-				-3.1
1,379,859	-				-0.5
1,379,859	-				+0.3
1,379,890	+				-0.7
1,379,890	+				-0.3
1,379,890	+				+0.4
1,379,891	-				+0.6
1,379,891	-				-0.5
1,379,891	-				-0.5
1,379,893	-				+0.1
1,379,949	+				-0.2
1,379,950	-				-0.3
1,379,950	-				-0.2
1,379,950	-				-0.8
1,379,956	+				-0.2
1,379,956	+				-0.4
1,379,956	+				-1.3
1,379,956	+				+0.6
1,379,957	-				-0.5
1,379,957	-				+0.5
1,380,016	+		BPHYT_RS06065	0.16	+0.4
1,380,085	+		BPHYT_RS06065	0.35	+0.2
1,380,085	+		BPHYT_RS06065	0.35	-0.9
1,380,086	-		BPHYT_RS06065	0.35	-0.4
1,380,086	-		BPHYT_RS06065	0.35	-1.0
1,380,134	+		BPHYT_RS06065	0.48	-0.6
1,380,134	+		BPHYT_RS06065	0.48	-0.9
1,380,170	+		BPHYT_RS06065	0.58	+1.2
1,380,194	+		BPHYT_RS06065	0.64	+1.0
1,380,194	+		BPHYT_RS06065	0.64	+0.6
1,380,195	-		BPHYT_RS06065	0.64	-0.4
1,380,278	+		BPHYT_RS06065	0.87	-0.5
1,380,278	+		BPHYT_RS06065	0.87	-1.1
1,380,278	+		BPHYT_RS06065	0.87	-0.3
1,380,281	+		BPHYT_RS06065	0.88	-1.1
1,380,281	+		BPHYT_RS06065	0.88	-0.9
1,380,282	-		BPHYT_RS06065	0.88	-0.5
1,380,374	+				-0.9
1,380,390	+				+0.3
1,380,390	+				-0.2
1,380,390	+				+0.2
1,380,391	-				+0.0