Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06055

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,376,322	-		BPHYT_RS06050	0.25	+0.4
1,376,323	+		BPHYT_RS06050	0.25	+0.6
1,376,323	+		BPHYT_RS06050	0.25	+0.0
1,376,323	+		BPHYT_RS06050	0.25	-0.2
1,376,376	-		BPHYT_RS06050	0.29	-1.1
1,376,713	+		BPHYT_RS06050	0.57	-0.0
1,376,713	+		BPHYT_RS06050	0.57	+0.7
1,376,713	+		BPHYT_RS06050	0.57	+1.1
1,376,766	+		BPHYT_RS06050	0.61	+0.9
1,377,073	-		BPHYT_RS06050	0.86	+0.3
1,377,317	+				-0.0
1,377,317	+				+0.0
1,377,318	-				+1.2
1,377,318	-				+0.1
1,377,516	-		BPHYT_RS06055	0.17	+0.5
1,377,672	-		BPHYT_RS06055	0.30	+0.2
1,377,690	-		BPHYT_RS06055	0.32	-0.3
1,378,061	+		BPHYT_RS06055	0.63	+0.1
1,378,299	-		BPHYT_RS06055	0.84	-0.9
1,378,367	+		BPHYT_RS06055	0.89	-0.3
1,378,370	+		BPHYT_RS06055	0.90	-0.8
1,378,370	+		BPHYT_RS06055	0.90	+1.7
1,378,371	-		BPHYT_RS06055	0.90	+0.1
1,378,371	-		BPHYT_RS06055	0.90	-0.1
1,378,576	+				-0.4
1,378,576	+				-1.3
1,378,576	+				+0.5
1,378,949	+		BPHYT_RS06060	0.37	-1.1
1,378,949	+		BPHYT_RS06060	0.37	-3.0
1,378,949	+		BPHYT_RS06060	0.37	+0.5
1,378,950	-		BPHYT_RS06060	0.38	+0.1
1,378,950	-		BPHYT_RS06060	0.38	+1.0
1,379,063	+		BPHYT_RS06060	0.51	-1.5
1,379,195	+		BPHYT_RS06060	0.67	+1.1
1,379,195	+		BPHYT_RS06060	0.67	+1.8
1,379,195	+		BPHYT_RS06060	0.67	+0.7
1,379,195	+		BPHYT_RS06060	0.67	+0.7
1,379,196	-		BPHYT_RS06060	0.67	+0.2