Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05655

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,291,524	-		BPHYT_RS05645	0.62	-0.3
1,291,548	+		BPHYT_RS05645	0.73	+0.0
1,291,548	+		BPHYT_RS05645	0.73	+1.5
1,291,549	-		BPHYT_RS05645	0.73	-2.3
1,291,593	+				+0.5
1,291,593	+				-0.6
1,291,594	-				+0.2
1,291,594	-				-0.7
1,291,594	-				+0.1
1,291,623	-				+0.7
1,291,697	+				+0.7
1,291,715	-				+0.3
1,291,734	+				-0.2
1,291,948	-				-0.2
1,292,029	-		BPHYT_RS05650	0.40	+1.2
1,292,105	+		BPHYT_RS05650	0.71	-0.7
1,292,131	-		BPHYT_RS05650	0.82	-0.4
1,292,308	+				-0.0
1,292,309	-				-0.1
1,292,309	-				+1.1
1,292,369	-				+0.1
1,292,369	-				+0.5
1,292,445	+				-0.5
1,292,445	+				-1.0
1,292,474	+				-0.2
1,292,474	+				-0.7
1,292,563	-		BPHYT_RS05655	0.17	+0.0
1,292,604	-		BPHYT_RS05655	0.23	-3.1
1,292,900	+		BPHYT_RS05655	0.63	-0.6
1,293,097	+		BPHYT_RS05655	0.89	-2.8
1,293,097	+		BPHYT_RS05655	0.89	-1.4
1,293,116	+				+0.4
1,293,306	+				-0.2
1,293,622	-				-2.7
1,293,649	-				+0.9
1,293,716	-				+0.8
1,293,716	-				+1.7
1,293,737	-				-0.2
1,293,737	-				+1.6
1,293,810	-		BPHYT_RS05665	0.13	+0.3
1,293,918	+		BPHYT_RS05665	0.22	-1.5
1,294,032	-		BPHYT_RS05665	0.33	+0.6
1,294,032	-		BPHYT_RS05665	0.33	+0.1