Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05470

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,256,182	+		BPHYT_RS05465	0.67	+0.2
1,256,226	+		BPHYT_RS05465	0.70	+0.1
1,256,227	-		BPHYT_RS05465	0.70	-0.2
1,256,227	-		BPHYT_RS05465	0.70	+0.2
1,256,347	+		BPHYT_RS05465	0.75	-0.0
1,256,347	+		BPHYT_RS05465	0.75	+0.1
1,256,348	-		BPHYT_RS05465	0.75	-0.3
1,256,370	+		BPHYT_RS05465	0.76	+1.1
1,256,370	+		BPHYT_RS05465	0.76	-0.2
1,256,371	-		BPHYT_RS05465	0.76	+1.1
1,256,371	-		BPHYT_RS05465	0.76	+0.6
1,256,410	-		BPHYT_RS05465	0.78	-1.7
1,256,525	+		BPHYT_RS05465	0.84	-0.1
1,256,716	+				-0.3
1,256,862	+				+1.1
1,257,046	-		BPHYT_RS05470	0.42	+1.5
1,257,122	-		BPHYT_RS05470	0.65	+0.2
1,257,285	+				+0.6
1,257,285	+				+1.0
1,257,285	+				+1.0
1,257,286	-				+0.1
1,257,472	-		BPHYT_RS05475	0.19	+0.1
1,257,474	+		BPHYT_RS05475	0.20	+0.4
1,257,475	-		BPHYT_RS05475	0.20	+0.7
1,257,475	-		BPHYT_RS05475	0.20	+0.7
1,257,532	-		BPHYT_RS05475	0.25	-1.2
1,257,565	-		BPHYT_RS05475	0.27	-0.5
1,257,600	+		BPHYT_RS05475	0.30	-0.0
1,258,176	+		BPHYT_RS05475	0.80	+0.5
1,258,177	-		BPHYT_RS05475	0.80	+0.4