Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05425 and BPHYT_RS05430 are separated by 192 nucleotides BPHYT_RS05430 and BPHYT_RS05435 are separated by 417 nucleotides
BPHYT_RS05425: BPHYT_RS05425 - oxidoreductase, at 1,244,919 to 1,247,021
_RS05425
BPHYT_RS05430: BPHYT_RS05430 - GntR family transcriptional regulator, at 1,247,214 to 1,248,629
_RS05430
BPHYT_RS05435: BPHYT_RS05435 - ABC transporter substrate-binding protein, at 1,249,047 to 1,250,210
_RS05435
Position (kb) 1247
1248
1249 Strain fitness (log2 ratio) -1
0
1
2 at 1246.394 kb on + strand, within BPHYT_RS05425 at 1246.527 kb on + strand, within BPHYT_RS05425 at 1246.529 kb on + strand, within BPHYT_RS05425 at 1246.627 kb on + strand, within BPHYT_RS05425 at 1246.833 kb on + strand at 1246.834 kb on - strand at 1247.220 kb on + strand at 1247.397 kb on + strand, within BPHYT_RS05430 at 1247.481 kb on + strand, within BPHYT_RS05430 at 1247.481 kb on + strand, within BPHYT_RS05430 at 1247.620 kb on - strand, within BPHYT_RS05430 at 1247.712 kb on + strand, within BPHYT_RS05430 at 1247.716 kb on + strand, within BPHYT_RS05430 at 1247.717 kb on - strand, within BPHYT_RS05430 at 1247.717 kb on - strand, within BPHYT_RS05430 at 1247.717 kb on - strand, within BPHYT_RS05430 at 1247.920 kb on + strand, within BPHYT_RS05430 at 1248.047 kb on - strand, within BPHYT_RS05430 at 1248.391 kb on + strand, within BPHYT_RS05430 at 1248.391 kb on + strand, within BPHYT_RS05430 at 1248.445 kb on + strand, within BPHYT_RS05430 at 1248.779 kb on - strand at 1248.965 kb on + strand at 1248.999 kb on + strand at 1249.261 kb on + strand, within BPHYT_RS05435 at 1249.271 kb on + strand, within BPHYT_RS05435 at 1249.321 kb on + strand, within BPHYT_RS05435 at 1249.542 kb on + strand, within BPHYT_RS05435 at 1249.566 kb on - strand, within BPHYT_RS05435
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 1,246,394 + BPHYT_RS05425 0.70 +1.0 1,246,527 + BPHYT_RS05425 0.76 +2.0 1,246,529 + BPHYT_RS05425 0.77 +0.5 1,246,627 + BPHYT_RS05425 0.81 +0.5 1,246,833 + +0.6 1,246,834 - +0.1 1,247,220 + -1.3 1,247,397 + BPHYT_RS05430 0.13 +1.6 1,247,481 + BPHYT_RS05430 0.19 +1.9 1,247,481 + BPHYT_RS05430 0.19 -0.2 1,247,620 - BPHYT_RS05430 0.29 -0.3 1,247,712 + BPHYT_RS05430 0.35 +0.7 1,247,716 + BPHYT_RS05430 0.35 -0.3 1,247,717 - BPHYT_RS05430 0.36 -0.2 1,247,717 - BPHYT_RS05430 0.36 +0.5 1,247,717 - BPHYT_RS05430 0.36 +1.0 1,247,920 + BPHYT_RS05430 0.50 +0.8 1,248,047 - BPHYT_RS05430 0.59 -1.0 1,248,391 + BPHYT_RS05430 0.83 +1.4 1,248,391 + BPHYT_RS05430 0.83 +0.1 1,248,445 + BPHYT_RS05430 0.87 +0.6 1,248,779 - +0.5 1,248,965 + +0.3 1,248,999 + +0.3 1,249,261 + BPHYT_RS05435 0.18 +0.9 1,249,271 + BPHYT_RS05435 0.19 +0.2 1,249,321 + BPHYT_RS05435 0.24 +1.2 1,249,542 + BPHYT_RS05435 0.43 -0.1 1,249,566 - BPHYT_RS05435 0.45 +0.1
Or see this region's nucleotide sequence