Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05315

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,223,230	-		BPHYT_RS05310	0.27	+0.5
1,223,348	-		BPHYT_RS05310	0.40	-0.3
1,223,348	-		BPHYT_RS05310	0.40	+0.3
1,223,404	+		BPHYT_RS05310	0.46	-2.4
1,223,692	-		BPHYT_RS05310	0.77	+1.3
1,223,702	+		BPHYT_RS05310	0.79	+1.5
1,223,703	-		BPHYT_RS05310	0.79	+1.0
1,223,703	-		BPHYT_RS05310	0.79	+0.4
1,223,706	-		BPHYT_RS05310	0.79	+0.8
1,223,706	-		BPHYT_RS05310	0.79	-0.2
1,223,788	+		BPHYT_RS05310	0.88	+0.9
1,223,901	+				+0.2
1,223,902	-				-1.4
1,223,938	+				+0.3
1,223,977	+				+0.3
1,224,685	-		BPHYT_RS05315	0.57	+0.7
1,224,766	-		BPHYT_RS05315	0.64	+1.4
1,224,888	+		BPHYT_RS05315	0.75	+0.9
1,225,031	+		BPHYT_RS05315	0.87	+0.4
1,225,234	-				-0.9
1,225,234	-				-1.0
1,225,248	+				-0.9
1,225,249	-				-0.1
1,225,528	+		BPHYT_RS05320	0.38	-0.9
1,225,528	+		BPHYT_RS05320	0.38	-0.0
1,226,014	-				+0.1