Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05105

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,177,520	+		BPHYT_RS05100	0.57	-0.1
1,177,521	-		BPHYT_RS05100	0.57	+2.1
1,177,557	+		BPHYT_RS05100	0.60	+0.2
1,177,557	+		BPHYT_RS05100	0.60	+0.3
1,177,675	+		BPHYT_RS05100	0.69	-0.2
1,177,675	+		BPHYT_RS05100	0.69	+0.6
1,177,692	+		BPHYT_RS05100	0.70	+0.6
1,177,692	+		BPHYT_RS05100	0.70	-0.2
1,177,780	-		BPHYT_RS05100	0.77	-0.2
1,177,780	-		BPHYT_RS05100	0.77	+0.2
1,177,790	+		BPHYT_RS05100	0.78	+0.4
1,177,927	-		BPHYT_RS05100	0.88	-0.9
1,177,977	+				-2.4
1,178,082	+				-0.9
1,178,184	+				+0.6
1,178,232	+				+0.6
1,178,273	+				+1.1
1,178,273	+				-2.0
1,178,273	+				-0.2
1,178,274	-				-0.4
1,178,274	-				+0.4
1,178,274	-				-2.5
1,178,318	+				-1.8
1,179,662	+				-1.3
1,179,663	-				+0.9
1,180,078	+				-0.4
1,180,079	-				-0.4
1,180,079	-				-0.6
1,180,311	-		BPHYT_RS05115	0.12	-1.8
1,180,403	-		BPHYT_RS05115	0.19	+0.1