Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05060

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05055 and BPHYT_RS05060 are separated by 66 nucleotidesBPHYT_RS05060 and BPHYT_RS05065 are separated by 13 nucleotidesBPHYT_RS05065 and BPHYT_RS05070 are separated by 180 nucleotides BPHYT_RS05055: BPHYT_RS05055 - flagellar hook protein FliD, at 1,164,949 to 1,166,457 _RS05055 BPHYT_RS05060: BPHYT_RS05060 - membrane protein, at 1,166,524 to 1,167,144 _RS05060 BPHYT_RS05065: BPHYT_RS05065 - DNA mismatch repair protein MutS, at 1,167,158 to 1,167,916 _RS05065 BPHYT_RS05070: BPHYT_RS05070 - thioredoxin reductase, at 1,168,097 to 1,169,098 _RS05070 Position (kb) 1166 1167 1168Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1165.599 kb on - strand, within BPHYT_RS05055at 1165.599 kb on - strand, within BPHYT_RS05055at 1165.897 kb on + strand, within BPHYT_RS05055at 1165.898 kb on - strand, within BPHYT_RS05055at 1165.898 kb on - strand, within BPHYT_RS05055at 1165.898 kb on - strand, within BPHYT_RS05055at 1165.936 kb on + strand, within BPHYT_RS05055at 1166.143 kb on - strandat 1166.314 kb on + strandat 1166.398 kb on + strandat 1166.520 kb on - strandat 1166.520 kb on - strandat 1166.603 kb on + strand, within BPHYT_RS05060at 1166.603 kb on + strand, within BPHYT_RS05060at 1166.639 kb on + strand, within BPHYT_RS05060at 1166.640 kb on - strand, within BPHYT_RS05060at 1166.640 kb on - strand, within BPHYT_RS05060at 1166.640 kb on - strand, within BPHYT_RS05060at 1166.640 kb on - strand, within BPHYT_RS05060at 1166.640 kb on - strand, within BPHYT_RS05060at 1166.815 kb on + strand, within BPHYT_RS05060at 1166.815 kb on + strand, within BPHYT_RS05060at 1166.815 kb on + strand, within BPHYT_RS05060at 1166.816 kb on - strand, within BPHYT_RS05060at 1166.816 kb on - strand, within BPHYT_RS05060at 1166.816 kb on - strand, within BPHYT_RS05060at 1166.937 kb on - strand, within BPHYT_RS05060at 1166.958 kb on - strand, within BPHYT_RS05060at 1167.299 kb on + strand, within BPHYT_RS05065at 1167.300 kb on - strand, within BPHYT_RS05065at 1167.734 kb on + strand, within BPHYT_RS05065at 1167.943 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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1,165,599 - BPHYT_RS05055 0.43 -0.2
1,165,599 - BPHYT_RS05055 0.43 -0.5
1,165,897 + BPHYT_RS05055 0.63 +0.0
1,165,898 - BPHYT_RS05055 0.63 -0.3
1,165,898 - BPHYT_RS05055 0.63 +2.2
1,165,898 - BPHYT_RS05055 0.63 +0.3
1,165,936 + BPHYT_RS05055 0.65 +2.7
1,166,143 - -0.2
1,166,314 + -0.9
1,166,398 + -0.8
1,166,520 - -0.2
1,166,520 - -5.8
1,166,603 + BPHYT_RS05060 0.13 -2.2
1,166,603 + BPHYT_RS05060 0.13 +0.1
1,166,639 + BPHYT_RS05060 0.19 +0.3
1,166,640 - BPHYT_RS05060 0.19 -0.4
1,166,640 - BPHYT_RS05060 0.19 -0.3
1,166,640 - BPHYT_RS05060 0.19 -1.0
1,166,640 - BPHYT_RS05060 0.19 +0.8
1,166,640 - BPHYT_RS05060 0.19 -0.5
1,166,815 + BPHYT_RS05060 0.47 -0.1
1,166,815 + BPHYT_RS05060 0.47 -0.3
1,166,815 + BPHYT_RS05060 0.47 -0.0
1,166,816 - BPHYT_RS05060 0.47 -0.3
1,166,816 - BPHYT_RS05060 0.47 +0.1
1,166,816 - BPHYT_RS05060 0.47 -0.2
1,166,937 - BPHYT_RS05060 0.67 -0.9
1,166,958 - BPHYT_RS05060 0.70 -0.5
1,167,299 + BPHYT_RS05065 0.19 -0.6
1,167,300 - BPHYT_RS05065 0.19 +0.3
1,167,734 + BPHYT_RS05065 0.76 +0.0
1,167,943 - -0.2

Or see this region's nucleotide sequence