Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05040

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,160,775	+				-1.0
1,160,776	-				-1.3
1,160,808	+				-1.0
1,160,808	+				-1.6
1,160,809	-				-1.1
1,160,836	+				-1.0
1,160,837	-				-2.0
1,160,837	-				-1.7
1,160,837	-				-0.5
1,160,881	+				-0.7
1,160,881	+				-1.2
1,161,019	-		BPHYT_RS05035	0.26	-1.5
1,161,100	+		BPHYT_RS05035	0.35	-1.3
1,161,265	+		BPHYT_RS05035	0.54	+0.4
1,161,265	+		BPHYT_RS05035	0.54	-0.5
1,161,266	-				-0.5
1,161,304	+		BPHYT_RS05035	0.59	-0.6
1,161,304	+		BPHYT_RS05035	0.59	-0.1
1,161,305	-		BPHYT_RS05035	0.59	-1.0
1,161,598	+				-2.4
1,161,598	+				-0.8
1,161,598	+				-1.1
1,161,599	-				-0.9
1,161,599	-				-0.8
1,161,795	-				-0.3
1,161,901	+		BPHYT_RS05040	0.13	-1.6
1,162,010	+		BPHYT_RS05040	0.23	-0.1
1,162,011	-		BPHYT_RS05040	0.23	-3.3
1,162,019	+		BPHYT_RS05040	0.23	-0.7
1,162,268	-		BPHYT_RS05040	0.46	-3.3
1,162,822	+				-0.6
1,162,823	-				+2.2
1,162,823	-				-0.1
1,162,893	+				-2.1
1,163,055	+		BPHYT_RS05045	0.11	-0.2
1,163,216	+		BPHYT_RS05045	0.28	-1.2
1,163,298	+		BPHYT_RS05045	0.37	+0.2
1,163,299	-		BPHYT_RS05045	0.37	-1.1
1,163,581	+		BPHYT_RS05045	0.68	-1.3
1,163,676	+		BPHYT_RS05045	0.79	-0.1
1,163,676	+		BPHYT_RS05045	0.79	-0.0
1,163,676	+		BPHYT_RS05045	0.79	-0.2
1,163,767	+		BPHYT_RS05045	0.88	-0.3
1,163,846	+				+0.0