Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05005

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,152,266	+		BPHYT_RS05000	0.56	-0.5
1,152,266	+		BPHYT_RS05000	0.56	+1.1
1,152,267	-		BPHYT_RS05000	0.56	+0.8
1,152,278	+		BPHYT_RS05000	0.57	+1.4
1,152,326	-		BPHYT_RS05000	0.59	-0.2
1,152,455	+		BPHYT_RS05000	0.67	+1.7
1,152,661	+		BPHYT_RS05000	0.79	+0.4
1,152,661	+		BPHYT_RS05000	0.79	-0.7
1,153,069	+				-1.1
1,153,122	-				-0.1
1,153,248	-		BPHYT_RS05005	0.36	+0.4
1,153,354	-		BPHYT_RS05005	0.66	-0.7
1,153,530	-				+0.2
1,153,530	-				+0.6
1,153,786	+				-1.1
1,154,062	+		BPHYT_RS05010	0.22	-3.2
1,154,089	-		BPHYT_RS05010	0.24	-2.7