Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04640

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,074,808	+		BPHYT_RS04640	0.23	-0.4
1,074,946	-		BPHYT_RS04640	0.34	-1.6
1,075,072	-		BPHYT_RS04640	0.43	-0.8
1,075,189	-		BPHYT_RS04640	0.52	-0.3
1,075,250	-		BPHYT_RS04640	0.57	-0.6
1,075,272	+		BPHYT_RS04640	0.59	+0.5
1,075,273	-		BPHYT_RS04640	0.59	-1.8
1,075,273	-		BPHYT_RS04640	0.59	+0.4
1,075,329	+		BPHYT_RS04640	0.63	+0.1
1,075,697	-				-1.3
1,075,697	-				+1.2
1,075,700	+				-0.2
1,075,700	+				-0.3
1,075,700	+				+0.1
1,075,700	+				-0.3
1,075,700	+				+0.3
1,075,701	-				-0.0
1,075,807	-				-1.1
1,075,807	-				+0.6
1,075,807	-				-0.8
1,075,807	-				-1.1
1,075,836	+				-1.0
1,075,915	-				-1.6
1,075,972	+				+0.8
1,075,972	+				+0.8
1,075,972	+				-0.4
1,075,981	+				+0.3
1,075,982	-				+1.4
1,076,110	+				+0.8
1,076,111	-				-0.4
1,076,119	-				-0.0
1,076,147	+				-0.1
1,076,182	-				+0.1
1,076,256	+				-0.0
1,076,341	+				-0.5
1,076,414	-		BPHYT_RS04645	0.13	+0.5
1,076,554	+		BPHYT_RS04645	0.28	+0.8
1,076,645	-		BPHYT_RS04645	0.37	-0.0
1,076,645	-		BPHYT_RS04645	0.37	-1.2