Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04635

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04630 and BPHYT_RS04635 are separated by 1 nucleotidesBPHYT_RS04635 and BPHYT_RS04640 are separated by 288 nucleotides BPHYT_RS04630: BPHYT_RS04630 - amino acid ABC transporter permease, at 1,071,463 to 1,072,647 _RS04630 BPHYT_RS04635: BPHYT_RS04635 - urea ABC transporter permease, at 1,072,649 to 1,074,220 _RS04635 BPHYT_RS04640: BPHYT_RS04640 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,074,509 to 1,075,804 _RS04640 Position (kb) 1072 1073 1074 1075Strain fitness (log2 ratio) -1 0 1 2at 1071.737 kb on + strand, within BPHYT_RS04630at 1071.810 kb on - strand, within BPHYT_RS04630at 1072.286 kb on + strand, within BPHYT_RS04630at 1072.608 kb on + strandat 1072.866 kb on + strand, within BPHYT_RS04635at 1072.866 kb on + strand, within BPHYT_RS04635at 1072.867 kb on - strand, within BPHYT_RS04635at 1072.867 kb on - strand, within BPHYT_RS04635at 1072.867 kb on - strand, within BPHYT_RS04635at 1072.867 kb on - strand, within BPHYT_RS04635at 1072.957 kb on - strand, within BPHYT_RS04635at 1073.113 kb on - strand, within BPHYT_RS04635at 1073.135 kb on + strand, within BPHYT_RS04635at 1073.403 kb on + strand, within BPHYT_RS04635at 1073.403 kb on + strand, within BPHYT_RS04635at 1073.403 kb on + strand, within BPHYT_RS04635at 1074.808 kb on + strand, within BPHYT_RS04640at 1074.946 kb on - strand, within BPHYT_RS04640at 1075.072 kb on - strand, within BPHYT_RS04640at 1075.189 kb on - strand, within BPHYT_RS04640

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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1,071,737 + BPHYT_RS04630 0.23 -0.4
1,071,810 - BPHYT_RS04630 0.29 -1.1
1,072,286 + BPHYT_RS04630 0.69 -0.3
1,072,608 + -0.4
1,072,866 + BPHYT_RS04635 0.14 +0.4
1,072,866 + BPHYT_RS04635 0.14 +0.3
1,072,867 - BPHYT_RS04635 0.14 +0.1
1,072,867 - BPHYT_RS04635 0.14 +0.2
1,072,867 - BPHYT_RS04635 0.14 +1.2
1,072,867 - BPHYT_RS04635 0.14 +0.1
1,072,957 - BPHYT_RS04635 0.20 +0.9
1,073,113 - BPHYT_RS04635 0.30 -1.0
1,073,135 + BPHYT_RS04635 0.31 +1.3
1,073,403 + BPHYT_RS04635 0.48 +2.1
1,073,403 + BPHYT_RS04635 0.48 -0.6
1,073,403 + BPHYT_RS04635 0.48 +0.4
1,074,808 + BPHYT_RS04640 0.23 -0.4
1,074,946 - BPHYT_RS04640 0.34 -1.6
1,075,072 - BPHYT_RS04640 0.43 -0.8
1,075,189 - BPHYT_RS04640 0.52 -0.3

Or see this region's nucleotide sequence