Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04285 and BPHYT_RS04290 are separated by 327 nucleotides BPHYT_RS04290 and BPHYT_RS04295 are separated by 225 nucleotides
BPHYT_RS04285: BPHYT_RS04285 - rhamnosyltransferase, at 980,750 to 981,661
_RS04285
BPHYT_RS04290: BPHYT_RS04290 - glycosyl transferase family 2, at 981,989 to 983,914
_RS04290
BPHYT_RS04295: BPHYT_RS04295 - ABC transporter, at 984,140 to 984,928
_RS04295
Position (kb) 981
982
983
984 Strain fitness (log2 ratio) -2
-1
0
1 at 981.138 kb on - strand, within BPHYT_RS04285 at 981.468 kb on - strand, within BPHYT_RS04285 at 981.468 kb on - strand, within BPHYT_RS04285 at 981.652 kb on + strand at 981.659 kb on + strand at 982.091 kb on + strand at 982.196 kb on + strand, within BPHYT_RS04290 at 982.587 kb on - strand, within BPHYT_RS04290 at 983.044 kb on + strand, within BPHYT_RS04290 at 983.714 kb on + strand, within BPHYT_RS04290 at 983.762 kb on + strand at 984.273 kb on - strand, within BPHYT_RS04295 at 984.286 kb on + strand, within BPHYT_RS04295 at 984.324 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.372 kb on - strand, within BPHYT_RS04295 at 984.372 kb on - strand, within BPHYT_RS04295 at 984.478 kb on + strand, within BPHYT_RS04295 at 984.478 kb on + strand, within BPHYT_RS04295 at 984.479 kb on - strand, within BPHYT_RS04295 at 984.623 kb on + strand, within BPHYT_RS04295 at 984.647 kb on + strand, within BPHYT_RS04295 at 984.698 kb on + strand, within BPHYT_RS04295 at 984.698 kb on + strand, within BPHYT_RS04295 at 984.699 kb on - strand, within BPHYT_RS04295 at 984.841 kb on + strand, within BPHYT_RS04295 at 984.841 kb on + strand, within BPHYT_RS04295
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 981,138 - BPHYT_RS04285 0.43 +0.1 981,468 - BPHYT_RS04285 0.79 +0.3 981,468 - BPHYT_RS04285 0.79 +1.0 981,652 + -0.5 981,659 + +0.4 982,091 + -1.0 982,196 + BPHYT_RS04290 0.11 -1.4 982,587 - BPHYT_RS04290 0.31 -2.1 983,044 + BPHYT_RS04290 0.55 -2.6 983,714 + BPHYT_RS04290 0.90 +0.3 983,762 + +0.8 984,273 - BPHYT_RS04295 0.17 -0.9 984,286 + BPHYT_RS04295 0.19 +0.7 984,324 + BPHYT_RS04295 0.23 +0.4 984,371 + BPHYT_RS04295 0.29 -0.5 984,371 + BPHYT_RS04295 0.29 -0.7 984,371 + BPHYT_RS04295 0.29 -0.8 984,372 - BPHYT_RS04295 0.29 +0.3 984,372 - BPHYT_RS04295 0.29 +0.6 984,478 + BPHYT_RS04295 0.43 +1.4 984,478 + BPHYT_RS04295 0.43 -0.8 984,479 - BPHYT_RS04295 0.43 -0.1 984,623 + BPHYT_RS04295 0.61 +0.1 984,647 + BPHYT_RS04295 0.64 +0.6 984,698 + BPHYT_RS04295 0.71 -0.9 984,698 + BPHYT_RS04295 0.71 +0.2 984,699 - BPHYT_RS04295 0.71 -0.8 984,841 + BPHYT_RS04295 0.89 +0.4 984,841 + BPHYT_RS04295 0.89 +0.1
Or see this region's nucleotide sequence