Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03605 and BPHYT_RS03610 are separated by 39 nucleotides BPHYT_RS03610 and BPHYT_RS03615 overlap by 4 nucleotides BPHYT_RS03615 and BPHYT_RS03620 are separated by 48 nucleotides
BPHYT_RS03605: BPHYT_RS03605 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 820,505 to 821,320
_RS03605
BPHYT_RS03610: BPHYT_RS03610 - deoxyadenosine kinase, at 821,360 to 822,040
_RS03610
BPHYT_RS03615: BPHYT_RS03615 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 822,037 to 822,585
_RS03615
BPHYT_RS03620: BPHYT_RS03620 - poly(A) polymerase, at 822,634 to 824,223
_RS03620
Position (kb) 822
823 Strain fitness (log2 ratio) -2
-1
0
1 at 821.484 kb on - strand, within BPHYT_RS03610 at 821.500 kb on - strand, within BPHYT_RS03610 at 821.506 kb on - strand, within BPHYT_RS03610 at 821.521 kb on - strand, within BPHYT_RS03610 at 821.545 kb on - strand, within BPHYT_RS03610 at 821.834 kb on - strand, within BPHYT_RS03610 at 822.089 kb on - strand at 822.089 kb on - strand at 822.631 kb on - strand at 822.631 kb on - strand at 822.631 kb on - strand at 822.818 kb on - strand, within BPHYT_RS03620 at 822.818 kb on - strand, within BPHYT_RS03620 at 822.818 kb on - strand, within BPHYT_RS03620 at 822.818 kb on - strand, within BPHYT_RS03620 at 822.890 kb on + strand, within BPHYT_RS03620 at 823.131 kb on + strand, within BPHYT_RS03620 at 823.132 kb on - strand, within BPHYT_RS03620 at 823.444 kb on + strand, within BPHYT_RS03620 at 823.444 kb on + strand, within BPHYT_RS03620 at 823.445 kb on - strand, within BPHYT_RS03620 at 823.542 kb on - strand, within BPHYT_RS03620 at 823.572 kb on - strand, within BPHYT_RS03620 at 823.572 kb on - strand, within BPHYT_RS03620 at 823.572 kb on - strand, within BPHYT_RS03620 at 823.574 kb on + strand, within BPHYT_RS03620 at 823.575 kb on - strand, within BPHYT_RS03620 at 823.575 kb on - strand, within BPHYT_RS03620 at 823.575 kb on - strand, within BPHYT_RS03620 at 823.575 kb on - strand, within BPHYT_RS03620
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 821,484 - BPHYT_RS03610 0.18 -1.4 821,500 - BPHYT_RS03610 0.21 -0.1 821,506 - BPHYT_RS03610 0.21 +0.5 821,521 - BPHYT_RS03610 0.24 +1.0 821,545 - BPHYT_RS03610 0.27 +0.2 821,834 - BPHYT_RS03610 0.70 -0.5 822,089 - -0.9 822,089 - -0.4 822,631 - +0.0 822,631 - +1.5 822,631 - -0.4 822,818 - BPHYT_RS03620 0.12 +0.2 822,818 - BPHYT_RS03620 0.12 +1.0 822,818 - BPHYT_RS03620 0.12 +0.9 822,818 - BPHYT_RS03620 0.12 -0.0 822,890 + BPHYT_RS03620 0.16 -0.1 823,131 + BPHYT_RS03620 0.31 +0.1 823,132 - BPHYT_RS03620 0.31 -0.9 823,444 + BPHYT_RS03620 0.51 -0.3 823,444 + BPHYT_RS03620 0.51 -2.1 823,445 - BPHYT_RS03620 0.51 -0.1 823,542 - BPHYT_RS03620 0.57 -2.3 823,572 - BPHYT_RS03620 0.59 -1.1 823,572 - BPHYT_RS03620 0.59 +0.6 823,572 - BPHYT_RS03620 0.59 +0.4 823,574 + BPHYT_RS03620 0.59 -0.0 823,575 - BPHYT_RS03620 0.59 +0.7 823,575 - BPHYT_RS03620 0.59 +0.1 823,575 - BPHYT_RS03620 0.59 +0.5 823,575 - BPHYT_RS03620 0.59 -0.1
Or see this region's nucleotide sequence