Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03155 and BPHYT_RS03160 are separated by 84 nucleotides BPHYT_RS03160 and BPHYT_RS03165 are separated by 67 nucleotides BPHYT_RS03165 and BPHYT_RS03170 are separated by 38 nucleotides
BPHYT_RS03155: BPHYT_RS03155 - histidine triad (HIT) protein, at 709,114 to 709,542
_RS03155
BPHYT_RS03160: BPHYT_RS03160 - hypothetical protein, at 709,627 to 710,040
_RS03160
BPHYT_RS03165: BPHYT_RS03165 - ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE, at 710,108 to 710,839
_RS03165
BPHYT_RS03170: BPHYT_RS03170 - membrane protein, at 710,878 to 711,870
_RS03170
Position (kb) 710
711 Strain fitness (log2 ratio) -1
0
1
2
3 at 709.294 kb on + strand, within BPHYT_RS03155 at 709.491 kb on + strand at 709.492 kb on - strand, within BPHYT_RS03155 at 709.492 kb on - strand, within BPHYT_RS03155 at 709.492 kb on - strand, within BPHYT_RS03155 at 709.616 kb on - strand at 709.626 kb on + strand at 709.626 kb on + strand at 709.705 kb on + strand, within BPHYT_RS03160 at 709.706 kb on - strand, within BPHYT_RS03160 at 709.754 kb on - strand, within BPHYT_RS03160 at 709.754 kb on - strand, within BPHYT_RS03160 at 709.823 kb on + strand, within BPHYT_RS03160 at 709.856 kb on - strand, within BPHYT_RS03160 at 709.900 kb on + strand, within BPHYT_RS03160 at 709.900 kb on + strand, within BPHYT_RS03160 at 709.900 kb on + strand, within BPHYT_RS03160 at 710.041 kb on + strand at 710.041 kb on + strand at 710.088 kb on + strand at 710.835 kb on - strand at 711.042 kb on + strand, within BPHYT_RS03170 at 711.316 kb on - strand, within BPHYT_RS03170 at 711.539 kb on - strand, within BPHYT_RS03170
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 709,294 + BPHYT_RS03155 0.42 +3.4 709,491 + -0.0 709,492 - BPHYT_RS03155 0.88 -0.9 709,492 - BPHYT_RS03155 0.88 -1.1 709,492 - BPHYT_RS03155 0.88 +0.7 709,616 - -0.4 709,626 + +0.0 709,626 + -0.2 709,705 + BPHYT_RS03160 0.19 +0.6 709,706 - BPHYT_RS03160 0.19 +0.1 709,754 - BPHYT_RS03160 0.31 -0.2 709,754 - BPHYT_RS03160 0.31 +0.5 709,823 + BPHYT_RS03160 0.47 -0.6 709,856 - BPHYT_RS03160 0.55 -0.3 709,900 + BPHYT_RS03160 0.66 +0.0 709,900 + BPHYT_RS03160 0.66 -1.0 709,900 + BPHYT_RS03160 0.66 +0.1 710,041 + -1.0 710,041 + -1.0 710,088 + -0.1 710,835 - +0.4 711,042 + BPHYT_RS03170 0.17 -0.2 711,316 - BPHYT_RS03170 0.44 -0.7 711,539 - BPHYT_RS03170 0.67 -0.9
Or see this region's nucleotide sequence