Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02820 and BPHYT_RS02825 are separated by 63 nucleotides BPHYT_RS02825 and BPHYT_RS02830 are separated by 77 nucleotides BPHYT_RS02830 and BPHYT_RS02835 are separated by 68 nucleotides BPHYT_RS02835 and BPHYT_RS02840 are separated by 150 nucleotides
BPHYT_RS02820: BPHYT_RS02820 - phosphopantetheine adenylyltransferase, at 632,067 to 632,582
_RS02820
BPHYT_RS02825: BPHYT_RS02825 - ferredoxin, at 632,646 to 632,903
_RS02825
BPHYT_RS02830: BPHYT_RS02830 - aspartate aminotransferase, at 632,981 to 634,060
_RS02830
BPHYT_RS02835: BPHYT_RS02835 - peptidyl-tRNA hydrolase, at 634,129 to 634,731
_RS02835
BPHYT_RS02840: BPHYT_RS02840 - 50S ribosomal protein L25, at 634,882 to 635,502
_RS02840
Position (kb) 632
633
634
635 Strain fitness (log2 ratio) -1
0
1
2 at 632.645 kb on + strand at 632.645 kb on + strand at 632.796 kb on - strand, within BPHYT_RS02825 at 632.796 kb on - strand, within BPHYT_RS02825 at 632.819 kb on + strand, within BPHYT_RS02825 at 632.871 kb on + strand, within BPHYT_RS02825 at 632.871 kb on + strand, within BPHYT_RS02825 at 632.907 kb on - strand at 632.935 kb on + strand at 632.935 kb on + strand at 632.936 kb on - strand at 632.936 kb on - strand at 632.972 kb on + strand at 632.972 kb on + strand at 632.991 kb on + strand at 632.991 kb on + strand at 632.992 kb on - strand at 633.129 kb on - strand, within BPHYT_RS02830 at 633.147 kb on + strand, within BPHYT_RS02830 at 633.147 kb on + strand, within BPHYT_RS02830 at 633.501 kb on + strand, within BPHYT_RS02830 at 633.501 kb on + strand, within BPHYT_RS02830 at 633.501 kb on + strand, within BPHYT_RS02830 at 633.501 kb on + strand, within BPHYT_RS02830 at 633.501 kb on + strand, within BPHYT_RS02830 at 633.501 kb on + strand, within BPHYT_RS02830 at 633.502 kb on - strand, within BPHYT_RS02830 at 633.502 kb on - strand, within BPHYT_RS02830 at 633.628 kb on + strand, within BPHYT_RS02830 at 633.628 kb on + strand, within BPHYT_RS02830 at 633.628 kb on + strand, within BPHYT_RS02830 at 633.629 kb on - strand, within BPHYT_RS02830 at 633.629 kb on - strand, within BPHYT_RS02830 at 633.629 kb on - strand, within BPHYT_RS02830 at 633.629 kb on - strand, within BPHYT_RS02830 at 633.631 kb on - strand, within BPHYT_RS02830 at 633.702 kb on + strand, within BPHYT_RS02830 at 633.703 kb on - strand, within BPHYT_RS02830 at 633.703 kb on - strand, within BPHYT_RS02830 at 633.712 kb on - strand, within BPHYT_RS02830 at 633.712 kb on - strand, within BPHYT_RS02830 at 633.720 kb on + strand, within BPHYT_RS02830 at 633.720 kb on + strand, within BPHYT_RS02830 at 633.720 kb on + strand, within BPHYT_RS02830 at 634.017 kb on + strand at 634.018 kb on - strand at 634.039 kb on + strand at 634.130 kb on + strand at 634.130 kb on + strand at 634.131 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 632,645 + -1.4 632,645 + +1.0 632,796 - BPHYT_RS02825 0.58 -1.2 632,796 - BPHYT_RS02825 0.58 -0.1 632,819 + BPHYT_RS02825 0.67 -0.4 632,871 + BPHYT_RS02825 0.87 -1.2 632,871 + BPHYT_RS02825 0.87 +0.8 632,907 - +0.0 632,935 + +2.0 632,935 + +1.2 632,936 - -0.8 632,936 - -0.6 632,972 + +0.5 632,972 + -1.4 632,991 + +0.1 632,991 + +0.5 632,992 - +0.7 633,129 - BPHYT_RS02830 0.14 -0.5 633,147 + BPHYT_RS02830 0.15 +0.7 633,147 + BPHYT_RS02830 0.15 +0.6 633,501 + BPHYT_RS02830 0.48 +0.4 633,501 + BPHYT_RS02830 0.48 +0.2 633,501 + BPHYT_RS02830 0.48 +0.7 633,501 + BPHYT_RS02830 0.48 -0.6 633,501 + BPHYT_RS02830 0.48 +0.0 633,501 + BPHYT_RS02830 0.48 -0.1 633,502 - BPHYT_RS02830 0.48 -0.5 633,502 - BPHYT_RS02830 0.48 +0.0 633,628 + BPHYT_RS02830 0.60 -0.6 633,628 + BPHYT_RS02830 0.60 -0.2 633,628 + BPHYT_RS02830 0.60 -0.4 633,629 - BPHYT_RS02830 0.60 +0.9 633,629 - BPHYT_RS02830 0.60 +1.0 633,629 - BPHYT_RS02830 0.60 +0.1 633,629 - BPHYT_RS02830 0.60 -1.2 633,631 - BPHYT_RS02830 0.60 -0.6 633,702 + BPHYT_RS02830 0.67 -1.3 633,703 - BPHYT_RS02830 0.67 +0.7 633,703 - BPHYT_RS02830 0.67 +0.5 633,712 - BPHYT_RS02830 0.68 +0.1 633,712 - BPHYT_RS02830 0.68 -0.6 633,720 + BPHYT_RS02830 0.68 +0.3 633,720 + BPHYT_RS02830 0.68 +0.1 633,720 + BPHYT_RS02830 0.68 -0.9 634,017 + -0.3 634,018 - +0.2 634,039 + -0.8 634,130 + +0.2 634,130 + +0.4 634,131 - +0.4
Or see this region's nucleotide sequence