Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02790 and BPHYT_RS02795 are separated by 508 nucleotides BPHYT_RS02795 and BPHYT_RS02800 are separated by 228 nucleotides BPHYT_RS02800 and BPHYT_RS02805 are separated by 25 nucleotides
BPHYT_RS02790: BPHYT_RS02790 - hypothetical protein, at 625,720 to 626,763
_RS02790
BPHYT_RS02795: BPHYT_RS02795 - glycosyl transferase, at 627,272 to 628,243
_RS02795
BPHYT_RS02800: BPHYT_RS02800 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 628,472 to 629,170
_RS02800
BPHYT_RS02805: BPHYT_RS02805 - maleylacetoacetate isomerase, at 629,196 to 629,840
_RS02805
Position (kb) 627
628
629 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 626.381 kb on + strand, within BPHYT_RS02790 at 626.381 kb on + strand, within BPHYT_RS02790 at 626.382 kb on - strand, within BPHYT_RS02790 at 626.988 kb on - strand at 627.005 kb on - strand at 627.005 kb on - strand at 627.106 kb on - strand at 627.110 kb on + strand at 627.111 kb on - strand at 627.117 kb on - strand at 627.117 kb on - strand at 627.184 kb on + strand at 627.184 kb on + strand at 627.184 kb on + strand at 627.184 kb on + strand at 627.185 kb on - strand at 627.185 kb on - strand at 627.185 kb on - strand at 627.189 kb on + strand at 627.190 kb on - strand at 627.190 kb on - strand at 627.190 kb on - strand at 627.499 kb on + strand, within BPHYT_RS02795 at 627.611 kb on - strand, within BPHYT_RS02795 at 627.611 kb on - strand, within BPHYT_RS02795 at 627.612 kb on + strand, within BPHYT_RS02795 at 627.612 kb on + strand, within BPHYT_RS02795 at 627.612 kb on + strand, within BPHYT_RS02795 at 627.613 kb on - strand, within BPHYT_RS02795 at 627.613 kb on - strand, within BPHYT_RS02795 at 627.613 kb on - strand, within BPHYT_RS02795 at 627.952 kb on - strand, within BPHYT_RS02795 at 627.952 kb on - strand, within BPHYT_RS02795 at 628.129 kb on - strand, within BPHYT_RS02795 at 628.129 kb on - strand, within BPHYT_RS02795 at 628.294 kb on + strand at 628.295 kb on - strand at 628.321 kb on + strand at 628.322 kb on - strand at 628.330 kb on + strand at 628.330 kb on + strand at 628.331 kb on - strand at 628.416 kb on + strand at 628.459 kb on - strand at 628.459 kb on - strand at 628.479 kb on - strand at 628.479 kb on - strand at 628.479 kb on - strand at 628.482 kb on + strand at 628.482 kb on + strand at 628.483 kb on - strand at 628.483 kb on - strand at 628.483 kb on - strand at 628.553 kb on + strand, within BPHYT_RS02800 at 628.553 kb on + strand, within BPHYT_RS02800 at 628.554 kb on - strand, within BPHYT_RS02800 at 628.571 kb on + strand, within BPHYT_RS02800 at 628.790 kb on + strand, within BPHYT_RS02800 at 628.790 kb on + strand, within BPHYT_RS02800 at 628.790 kb on + strand, within BPHYT_RS02800 at 628.791 kb on - strand, within BPHYT_RS02800 at 629.030 kb on + strand, within BPHYT_RS02800 at 629.031 kb on - strand, within BPHYT_RS02800 at 629.031 kb on - strand, within BPHYT_RS02800 at 629.031 kb on - strand, within BPHYT_RS02800 at 629.205 kb on + strand at 629.205 kb on + strand at 629.205 kb on + strand at 629.205 kb on + strand at 629.206 kb on - strand at 629.206 kb on - strand at 629.206 kb on - strand at 629.206 kb on - strand at 629.206 kb on - strand at 629.211 kb on + strand at 629.212 kb on - strand at 629.232 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 626,381 + BPHYT_RS02790 0.63 -0.4 626,381 + BPHYT_RS02790 0.63 -0.2 626,382 - BPHYT_RS02790 0.63 -0.3 626,988 - +0.2 627,005 - +0.9 627,005 - +0.3 627,106 - +0.2 627,110 + +0.6 627,111 - +0.5 627,117 - -0.1 627,117 - -0.3 627,184 + -0.2 627,184 + -1.1 627,184 + -0.2 627,184 + +0.1 627,185 - +0.3 627,185 - -0.5 627,185 - +0.2 627,189 + +0.0 627,190 - +0.6 627,190 - +2.0 627,190 - +0.5 627,499 + BPHYT_RS02795 0.23 -3.4 627,611 - BPHYT_RS02795 0.35 -4.1 627,611 - BPHYT_RS02795 0.35 -3.2 627,612 + BPHYT_RS02795 0.35 -3.9 627,612 + BPHYT_RS02795 0.35 -3.0 627,612 + BPHYT_RS02795 0.35 -0.4 627,613 - BPHYT_RS02795 0.35 -2.7 627,613 - BPHYT_RS02795 0.35 -3.4 627,613 - BPHYT_RS02795 0.35 -3.1 627,952 - BPHYT_RS02795 0.70 -3.5 627,952 - BPHYT_RS02795 0.70 -4.5 628,129 - BPHYT_RS02795 0.88 +0.8 628,129 - BPHYT_RS02795 0.88 -3.8 628,294 + -4.2 628,295 - +0.9 628,321 + -3.3 628,322 - -1.0 628,330 + +0.2 628,330 + +1.0 628,331 - +0.3 628,416 + +2.8 628,459 - +1.3 628,459 - -0.5 628,479 - -0.7 628,479 - +0.5 628,479 - -1.1 628,482 + -0.6 628,482 + +0.5 628,483 - -0.8 628,483 - +0.6 628,483 - -1.2 628,553 + BPHYT_RS02800 0.12 +0.5 628,553 + BPHYT_RS02800 0.12 +0.1 628,554 - BPHYT_RS02800 0.12 -0.6 628,571 + BPHYT_RS02800 0.14 +0.3 628,790 + BPHYT_RS02800 0.45 -1.1 628,790 + BPHYT_RS02800 0.45 -0.3 628,790 + BPHYT_RS02800 0.45 -0.7 628,791 - BPHYT_RS02800 0.46 -0.4 629,030 + BPHYT_RS02800 0.80 -0.6 629,031 - BPHYT_RS02800 0.80 -0.5 629,031 - BPHYT_RS02800 0.80 +0.0 629,031 - BPHYT_RS02800 0.80 -1.8 629,205 + +0.1 629,205 + -0.1 629,205 + +0.4 629,205 + -0.1 629,206 - -0.8 629,206 - -0.5 629,206 - +0.7 629,206 - +1.1 629,206 - -0.6 629,211 + -0.6 629,212 - +0.0 629,232 + -0.2
Or see this region's nucleotide sequence