Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02645 and BPHYT_RS02650 are separated by 114 nucleotides BPHYT_RS02650 and BPHYT_RS02655 are separated by 42 nucleotides BPHYT_RS02655 and BPHYT_RS02660 are separated by 36 nucleotides BPHYT_RS02660 and BPHYT_RS02665 are separated by 132 nucleotides
BPHYT_RS02645: BPHYT_RS02645 - cytochrome oxidase subunit I, at 597,377 to 598,990
_RS02645
BPHYT_RS02650: BPHYT_RS02650 - membrane protein, at 599,105 to 599,239
_RS02650
BPHYT_RS02655: BPHYT_RS02655 - cytochrome C oxidase assembly protein, at 599,282 to 599,920
_RS02655
BPHYT_RS02660: BPHYT_RS02660 - membrane protein, at 599,957 to 600,166
_RS02660
BPHYT_RS02665: BPHYT_RS02665 - MFS transporter, at 600,299 to 601,156
_RS02665
Position (kb) 599
600
601 Strain fitness (log2 ratio) -2
-1
0
1 at 599.036 kb on + strand at 599.036 kb on + strand at 599.075 kb on + strand at 599.132 kb on - strand, within BPHYT_RS02650 at 599.450 kb on - strand, within BPHYT_RS02655 at 599.470 kb on + strand, within BPHYT_RS02655 at 599.594 kb on + strand, within BPHYT_RS02655 at 599.594 kb on + strand, within BPHYT_RS02655 at 599.649 kb on - strand, within BPHYT_RS02655 at 599.673 kb on - strand, within BPHYT_RS02655 at 599.755 kb on - strand, within BPHYT_RS02655 at 600.124 kb on + strand, within BPHYT_RS02660 at 600.156 kb on + strand at 600.159 kb on + strand at 600.184 kb on + strand at 600.251 kb on + strand at 600.252 kb on - strand at 600.323 kb on + strand at 600.323 kb on + strand at 600.326 kb on + strand at 600.466 kb on + strand, within BPHYT_RS02665 at 600.518 kb on + strand, within BPHYT_RS02665 at 600.518 kb on + strand, within BPHYT_RS02665 at 600.519 kb on - strand, within BPHYT_RS02665 at 600.519 kb on - strand, within BPHYT_RS02665 at 600.519 kb on - strand, within BPHYT_RS02665 at 600.614 kb on + strand, within BPHYT_RS02665 at 600.614 kb on + strand, within BPHYT_RS02665 at 600.614 kb on + strand, within BPHYT_RS02665 at 600.615 kb on - strand, within BPHYT_RS02665 at 600.615 kb on - strand, within BPHYT_RS02665 at 600.656 kb on + strand, within BPHYT_RS02665 at 600.657 kb on - strand, within BPHYT_RS02665 at 600.918 kb on - strand, within BPHYT_RS02665 at 600.918 kb on - strand, within BPHYT_RS02665 at 600.953 kb on + strand, within BPHYT_RS02665 at 600.954 kb on - strand, within BPHYT_RS02665 at 600.954 kb on - strand, within BPHYT_RS02665 at 600.954 kb on - strand at 601.039 kb on + strand, within BPHYT_RS02665 at 601.057 kb on + strand at 601.058 kb on - strand at 601.134 kb on - strand at 601.134 kb on - strand at 601.134 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 599,036 + +0.2 599,036 + -1.6 599,075 + +1.1 599,132 - BPHYT_RS02650 0.20 +0.9 599,450 - BPHYT_RS02655 0.26 -1.3 599,470 + BPHYT_RS02655 0.29 -0.1 599,594 + BPHYT_RS02655 0.49 +0.5 599,594 + BPHYT_RS02655 0.49 +0.5 599,649 - BPHYT_RS02655 0.57 +0.4 599,673 - BPHYT_RS02655 0.61 -0.2 599,755 - BPHYT_RS02655 0.74 -0.4 600,124 + BPHYT_RS02660 0.80 -1.2 600,156 + -0.9 600,159 + -0.5 600,184 + +1.0 600,251 + +0.8 600,252 - +1.0 600,323 + +0.1 600,323 + -2.7 600,326 + +0.5 600,466 + BPHYT_RS02665 0.19 -0.1 600,518 + BPHYT_RS02665 0.26 -1.0 600,518 + BPHYT_RS02665 0.26 +0.5 600,519 - BPHYT_RS02665 0.26 -0.6 600,519 - BPHYT_RS02665 0.26 +0.6 600,519 - BPHYT_RS02665 0.26 -0.2 600,614 + BPHYT_RS02665 0.37 -0.2 600,614 + BPHYT_RS02665 0.37 -0.3 600,614 + BPHYT_RS02665 0.37 +0.0 600,615 - BPHYT_RS02665 0.37 -0.3 600,615 - BPHYT_RS02665 0.37 -0.7 600,656 + BPHYT_RS02665 0.42 -1.9 600,657 - BPHYT_RS02665 0.42 -0.6 600,918 - BPHYT_RS02665 0.72 +0.4 600,918 - BPHYT_RS02665 0.72 +0.3 600,953 + BPHYT_RS02665 0.76 -0.2 600,954 - BPHYT_RS02665 0.76 +0.1 600,954 - BPHYT_RS02665 0.76 -0.2 600,954 - +0.3 601,039 + BPHYT_RS02665 0.86 -0.6 601,057 + -0.1 601,058 - +0.3 601,134 - -0.6 601,134 - -1.3 601,134 - +0.6
Or see this region's nucleotide sequence