Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02455 and BPHYT_RS02460 are separated by 41 nucleotides BPHYT_RS02460 and BPHYT_RS02465 overlap by 4 nucleotides BPHYT_RS02465 and BPHYT_RS02470 are separated by 27 nucleotides
BPHYT_RS02455: BPHYT_RS02455 - taurine ABC transporter substrate-binding protein, at 557,015 to 557,998
_RS02455
BPHYT_RS02460: BPHYT_RS02460 - nitrate ABC transporter ATP-binding protein, at 558,040 to 558,837
_RS02460
BPHYT_RS02465: BPHYT_RS02465 - taurine ABC transporter permease, at 558,834 to 559,703
_RS02465
BPHYT_RS02470: BPHYT_RS02470 - phosphoserine phosphatase, at 559,731 to 560,414
_RS02470
Position (kb) 558
559 Strain fitness (log2 ratio) -2
-1
0
1
2 at 557.147 kb on + strand, within BPHYT_RS02455 at 557.273 kb on - strand, within BPHYT_RS02455 at 557.343 kb on + strand, within BPHYT_RS02455 at 557.522 kb on + strand, within BPHYT_RS02455 at 557.522 kb on + strand, within BPHYT_RS02455 at 557.522 kb on + strand, within BPHYT_RS02455 at 557.522 kb on + strand, within BPHYT_RS02455 at 557.524 kb on + strand, within BPHYT_RS02455 at 557.524 kb on + strand, within BPHYT_RS02455 at 557.575 kb on + strand, within BPHYT_RS02455 at 557.576 kb on - strand, within BPHYT_RS02455 at 557.813 kb on + strand, within BPHYT_RS02455 at 558.129 kb on - strand, within BPHYT_RS02460 at 558.133 kb on - strand, within BPHYT_RS02460 at 558.242 kb on + strand, within BPHYT_RS02460 at 558.442 kb on + strand, within BPHYT_RS02460 at 558.442 kb on + strand, within BPHYT_RS02460 at 558.442 kb on + strand, within BPHYT_RS02460 at 558.515 kb on + strand, within BPHYT_RS02460 at 558.696 kb on + strand, within BPHYT_RS02460 at 558.700 kb on + strand, within BPHYT_RS02460 at 558.700 kb on + strand, within BPHYT_RS02460 at 558.700 kb on + strand, within BPHYT_RS02460 at 558.701 kb on - strand, within BPHYT_RS02460 at 558.701 kb on - strand, within BPHYT_RS02460 at 558.701 kb on - strand, within BPHYT_RS02460 at 559.028 kb on - strand, within BPHYT_RS02465 at 559.243 kb on - strand, within BPHYT_RS02465 at 559.326 kb on + strand, within BPHYT_RS02465 at 559.326 kb on + strand, within BPHYT_RS02465 at 559.326 kb on + strand, within BPHYT_RS02465 at 559.327 kb on - strand, within BPHYT_RS02465 at 559.327 kb on - strand, within BPHYT_RS02465 at 559.407 kb on + strand, within BPHYT_RS02465 at 559.408 kb on - strand, within BPHYT_RS02465 at 559.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 557,147 + BPHYT_RS02455 0.13 +0.1 557,273 - BPHYT_RS02455 0.26 -1.8 557,343 + BPHYT_RS02455 0.33 +0.7 557,522 + BPHYT_RS02455 0.52 +1.6 557,522 + BPHYT_RS02455 0.52 -0.0 557,522 + BPHYT_RS02455 0.52 +1.3 557,522 + BPHYT_RS02455 0.52 -0.4 557,524 + BPHYT_RS02455 0.52 -0.1 557,524 + BPHYT_RS02455 0.52 -0.4 557,575 + BPHYT_RS02455 0.57 -0.8 557,576 - BPHYT_RS02455 0.57 +0.8 557,813 + BPHYT_RS02455 0.81 +0.6 558,129 - BPHYT_RS02460 0.11 -0.1 558,133 - BPHYT_RS02460 0.12 -1.0 558,242 + BPHYT_RS02460 0.25 -0.6 558,442 + BPHYT_RS02460 0.50 -0.3 558,442 + BPHYT_RS02460 0.50 +0.3 558,442 + BPHYT_RS02460 0.50 +0.1 558,515 + BPHYT_RS02460 0.60 -0.3 558,696 + BPHYT_RS02460 0.82 +0.6 558,700 + BPHYT_RS02460 0.83 -0.4 558,700 + BPHYT_RS02460 0.83 +0.4 558,700 + BPHYT_RS02460 0.83 +1.6 558,701 - BPHYT_RS02460 0.83 +0.4 558,701 - BPHYT_RS02460 0.83 +0.8 558,701 - BPHYT_RS02460 0.83 +0.2 559,028 - BPHYT_RS02465 0.22 +1.1 559,243 - BPHYT_RS02465 0.47 -1.2 559,326 + BPHYT_RS02465 0.57 +0.8 559,326 + BPHYT_RS02465 0.57 -0.5 559,326 + BPHYT_RS02465 0.57 +2.0 559,327 - BPHYT_RS02465 0.57 +0.6 559,327 - BPHYT_RS02465 0.57 +0.2 559,407 + BPHYT_RS02465 0.66 +0.3 559,408 - BPHYT_RS02465 0.66 +0.7 559,702 - +1.5
Or see this region's nucleotide sequence