Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01930

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01920 and BPHYT_RS01925 are separated by 90 nucleotidesBPHYT_RS01925 and BPHYT_RS01930 overlap by 4 nucleotidesBPHYT_RS01930 and BPHYT_RS01935 are separated by 608 nucleotides BPHYT_RS01920: BPHYT_RS01920 - AsnC family transcriptional regulator, at 437,549 to 438,007 _RS01920 BPHYT_RS01925: BPHYT_RS01925 - exonuclease, at 438,098 to 438,727 _RS01925 BPHYT_RS01930: BPHYT_RS01930 - hypothetical protein, at 438,724 to 439,368 _RS01930 BPHYT_RS01935: BPHYT_RS01935 - lipoprotein, at 439,977 to 440,609 _RS01935 Position (kb) 438 439 440Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 437.797 kb on + strand, within BPHYT_RS01920at 437.797 kb on + strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.996 kb on - strandat 438.095 kb on + strandat 438.096 kb on - strandat 438.099 kb on + strandat 438.390 kb on + strand, within BPHYT_RS01925at 438.391 kb on - strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.475 kb on - strand, within BPHYT_RS01925at 438.475 kb on - strand, within BPHYT_RS01925at 438.475 kb on - strand, within BPHYT_RS01925at 438.636 kb on + strand, within BPHYT_RS01925at 438.707 kb on + strandat 438.707 kb on + strandat 438.707 kb on + strandat 438.707 kb on + strandat 438.708 kb on - strandat 438.708 kb on - strandat 438.708 kb on - strandat 438.708 kb on - strandat 438.708 kb on - strandat 438.708 kb on - strandat 438.712 kb on - strandat 438.712 kb on - strandat 438.750 kb on - strandat 438.780 kb on + strandat 438.781 kb on - strandat 438.972 kb on + strand, within BPHYT_RS01930at 438.972 kb on + strand, within BPHYT_RS01930at 438.973 kb on - strand, within BPHYT_RS01930at 438.989 kb on + strand, within BPHYT_RS01930at 438.989 kb on + strand, within BPHYT_RS01930at 438.989 kb on + strand, within BPHYT_RS01930at 438.990 kb on - strand, within BPHYT_RS01930at 438.990 kb on - strand, within BPHYT_RS01930at 438.990 kb on - strand, within BPHYT_RS01930at 438.990 kb on - strand, within BPHYT_RS01930at 439.401 kb on + strandat 439.401 kb on + strandat 439.401 kb on + strandat 439.401 kb on + strandat 439.402 kb on - strandat 439.412 kb on - strandat 439.537 kb on - strandat 439.538 kb on + strandat 439.538 kb on + strandat 439.539 kb on - strandat 439.539 kb on - strandat 439.539 kb on - strandat 439.622 kb on + strandat 439.623 kb on - strandat 439.655 kb on + strandat 439.715 kb on + strandat 439.716 kb on - strandat 439.741 kb on + strandat 440.006 kb on + strandat 440.007 kb on - strandat 440.007 kb on - strandat 440.007 kb on - strandat 440.091 kb on - strand, within BPHYT_RS01935at 440.325 kb on + strand, within BPHYT_RS01935at 440.325 kb on + strand, within BPHYT_RS01935at 440.357 kb on + strand, within BPHYT_RS01935at 440.357 kb on + strand, within BPHYT_RS01935at 440.357 kb on + strand, within BPHYT_RS01935at 440.357 kb on + strand, within BPHYT_RS01935at 440.357 kb on + strand, within BPHYT_RS01935at 440.357 kb on + strandat 440.357 kb on + strand, within BPHYT_RS01935at 440.358 kb on - strandat 440.358 kb on - strand, within BPHYT_RS01935at 440.358 kb on - strand, within BPHYT_RS01935

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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437,797 + BPHYT_RS01920 0.54 -1.1
437,797 + BPHYT_RS01920 0.54 -0.8
437,798 - BPHYT_RS01920 0.54 -0.6
437,798 - BPHYT_RS01920 0.54 -0.9
437,798 - BPHYT_RS01920 0.54 -1.4
437,798 - BPHYT_RS01920 0.54 -3.3
437,798 - BPHYT_RS01920 0.54 -2.2
437,996 - -0.7
438,095 + +0.1
438,096 - -0.3
438,099 + +0.7
438,390 + BPHYT_RS01925 0.46 -0.4
438,391 - BPHYT_RS01925 0.47 +0.4
438,400 + BPHYT_RS01925 0.48 -0.9
438,400 + BPHYT_RS01925 0.48 +0.1
438,400 + BPHYT_RS01925 0.48 +1.0
438,400 + BPHYT_RS01925 0.48 -0.1
438,400 + BPHYT_RS01925 0.48 +1.1
438,400 + BPHYT_RS01925 0.48 -2.1
438,400 + BPHYT_RS01925 0.48 -1.6
438,401 - BPHYT_RS01925 0.48 -2.6
438,401 - BPHYT_RS01925 0.48 +0.5
438,401 - BPHYT_RS01925 0.48 +0.5
438,401 - BPHYT_RS01925 0.48 -0.1
438,401 - BPHYT_RS01925 0.48 -0.0
438,401 - BPHYT_RS01925 0.48 +0.3
438,401 - BPHYT_RS01925 0.48 -0.1
438,401 - BPHYT_RS01925 0.48 +0.7
438,401 - BPHYT_RS01925 0.48 -0.1
438,401 - BPHYT_RS01925 0.48 +0.5
438,402 + BPHYT_RS01925 0.48 -0.7
438,402 + BPHYT_RS01925 0.48 +1.4
438,402 + BPHYT_RS01925 0.48 +0.3
438,402 + BPHYT_RS01925 0.48 -0.3
438,402 + BPHYT_RS01925 0.48 +0.3
438,402 + BPHYT_RS01925 0.48 +0.7
438,402 + BPHYT_RS01925 0.48 -1.3
438,402 + BPHYT_RS01925 0.48 +0.1
438,403 - BPHYT_RS01925 0.48 +0.2
438,403 - BPHYT_RS01925 0.48 +0.9
438,403 - BPHYT_RS01925 0.48 +0.8
438,403 - BPHYT_RS01925 0.48 -0.1
438,403 - BPHYT_RS01925 0.48 +0.5
438,403 - BPHYT_RS01925 0.48 -0.6
438,403 - BPHYT_RS01925 0.48 -0.2
438,403 - BPHYT_RS01925 0.48 +0.2
438,403 - BPHYT_RS01925 0.48 +2.0
438,403 - BPHYT_RS01925 0.48 +1.0
438,403 - BPHYT_RS01925 0.48 -0.4
438,475 - BPHYT_RS01925 0.60 +0.0
438,475 - BPHYT_RS01925 0.60 -1.0
438,475 - BPHYT_RS01925 0.60 -0.2
438,636 + BPHYT_RS01925 0.85 +0.2
438,707 + -2.4
438,707 + -0.2
438,707 + -1.2
438,707 + +0.3
438,708 - +0.8
438,708 - -1.2
438,708 - -0.0
438,708 - -0.0
438,708 - -0.2
438,708 - -0.9
438,712 - -0.4
438,712 - +0.0
438,750 - -1.8
438,780 + -0.4
438,781 - -0.2
438,972 + BPHYT_RS01930 0.38 -0.4
438,972 + BPHYT_RS01930 0.38 +0.4
438,973 - BPHYT_RS01930 0.39 -0.3
438,989 + BPHYT_RS01930 0.41 -2.5
438,989 + BPHYT_RS01930 0.41 -0.1
438,989 + BPHYT_RS01930 0.41 -0.9
438,990 - BPHYT_RS01930 0.41 -0.0
438,990 - BPHYT_RS01930 0.41 -0.7
438,990 - BPHYT_RS01930 0.41 +0.3
438,990 - BPHYT_RS01930 0.41 -2.3
439,401 + -0.9
439,401 + -0.3
439,401 + -0.2
439,401 + +0.5
439,402 - -0.4
439,412 - -0.2
439,537 - -0.5
439,538 + +0.9
439,538 + -0.9
439,539 - -0.0
439,539 - +0.3
439,539 - -0.0
439,622 + -0.2
439,623 - -0.1
439,655 + -0.8
439,715 + +0.6
439,716 - +0.1
439,741 + -0.0
440,006 + +0.1
440,007 - +0.9
440,007 - -0.5
440,007 - -1.2
440,091 - BPHYT_RS01935 0.18 +0.0
440,325 + BPHYT_RS01935 0.55 +0.3
440,325 + BPHYT_RS01935 0.55 +0.5
440,357 + BPHYT_RS01935 0.60 -0.5
440,357 + BPHYT_RS01935 0.60 +0.6
440,357 + BPHYT_RS01935 0.60 +0.3
440,357 + BPHYT_RS01935 0.60 +0.2
440,357 + BPHYT_RS01935 0.60 +0.5
440,357 + -0.3
440,357 + BPHYT_RS01935 0.60 +0.3
440,358 - +2.3
440,358 - BPHYT_RS01935 0.60 -1.0
440,358 - BPHYT_RS01935 0.60 +0.3

Or see this region's nucleotide sequence