Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01920

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01915 and BPHYT_RS01920 are separated by 61 nucleotidesBPHYT_RS01920 and BPHYT_RS01925 are separated by 90 nucleotidesBPHYT_RS01925 and BPHYT_RS01930 overlap by 4 nucleotides BPHYT_RS01915: BPHYT_RS01915 - cation diffusion facilitator family transporter, at 436,231 to 437,487 _RS01915 BPHYT_RS01920: BPHYT_RS01920 - AsnC family transcriptional regulator, at 437,549 to 438,007 _RS01920 BPHYT_RS01925: BPHYT_RS01925 - exonuclease, at 438,098 to 438,727 _RS01925 BPHYT_RS01930: BPHYT_RS01930 - hypothetical protein, at 438,724 to 439,368 _RS01930 Position (kb) 437 438 439Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 436.596 kb on + strand, within BPHYT_RS01915at 436.596 kb on + strand, within BPHYT_RS01915at 436.597 kb on - strand, within BPHYT_RS01915at 436.597 kb on - strand, within BPHYT_RS01915at 436.597 kb on - strand, within BPHYT_RS01915at 436.597 kb on - strand, within BPHYT_RS01915at 436.620 kb on - strand, within BPHYT_RS01915at 436.655 kb on - strand, within BPHYT_RS01915at 436.756 kb on - strand, within BPHYT_RS01915at 436.926 kb on + strand, within BPHYT_RS01915at 437.038 kb on + strand, within BPHYT_RS01915at 437.039 kb on - strand, within BPHYT_RS01915at 437.039 kb on - strand, within BPHYT_RS01915at 437.039 kb on - strand, within BPHYT_RS01915at 437.039 kb on - strand, within BPHYT_RS01915at 437.039 kb on - strand, within BPHYT_RS01915at 437.039 kb on - strand, within BPHYT_RS01915at 437.152 kb on - strand, within BPHYT_RS01915at 437.152 kb on - strand, within BPHYT_RS01915at 437.230 kb on + strand, within BPHYT_RS01915at 437.258 kb on + strand, within BPHYT_RS01915at 437.372 kb on + strandat 437.372 kb on + strandat 437.373 kb on - strandat 437.373 kb on - strandat 437.655 kb on + strand, within BPHYT_RS01920at 437.656 kb on - strand, within BPHYT_RS01920at 437.691 kb on + strand, within BPHYT_RS01920at 437.691 kb on + strand, within BPHYT_RS01920at 437.692 kb on - strand, within BPHYT_RS01920at 437.716 kb on - strandat 437.797 kb on + strand, within BPHYT_RS01920at 437.797 kb on + strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.798 kb on - strand, within BPHYT_RS01920at 437.996 kb on - strandat 438.095 kb on + strandat 438.096 kb on - strandat 438.099 kb on + strandat 438.390 kb on + strand, within BPHYT_RS01925at 438.391 kb on - strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.400 kb on + strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.401 kb on - strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.402 kb on + strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.403 kb on - strand, within BPHYT_RS01925at 438.475 kb on - strand, within BPHYT_RS01925at 438.475 kb on - strand, within BPHYT_RS01925at 438.475 kb on - strand, within BPHYT_RS01925at 438.636 kb on + strand, within BPHYT_RS01925at 438.707 kb on + strandat 438.707 kb on + strandat 438.707 kb on + strandat 438.707 kb on + strandat 438.708 kb on - strandat 438.708 kb on - strandat 438.708 kb on - strandat 438.708 kb on - strandat 438.708 kb on - strandat 438.708 kb on - strandat 438.712 kb on - strandat 438.712 kb on - strandat 438.750 kb on - strandat 438.780 kb on + strandat 438.781 kb on - strandat 438.972 kb on + strand, within BPHYT_RS01930at 438.972 kb on + strand, within BPHYT_RS01930at 438.973 kb on - strand, within BPHYT_RS01930at 438.989 kb on + strand, within BPHYT_RS01930at 438.989 kb on + strand, within BPHYT_RS01930at 438.989 kb on + strand, within BPHYT_RS01930at 438.990 kb on - strand, within BPHYT_RS01930at 438.990 kb on - strand, within BPHYT_RS01930at 438.990 kb on - strand, within BPHYT_RS01930at 438.990 kb on - strand, within BPHYT_RS01930

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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436,596 + BPHYT_RS01915 0.29 -0.0
436,596 + BPHYT_RS01915 0.29 -0.3
436,597 - BPHYT_RS01915 0.29 -0.3
436,597 - BPHYT_RS01915 0.29 +0.1
436,597 - BPHYT_RS01915 0.29 -0.2
436,597 - BPHYT_RS01915 0.29 -0.1
436,620 - BPHYT_RS01915 0.31 -0.5
436,655 - BPHYT_RS01915 0.34 +0.9
436,756 - BPHYT_RS01915 0.42 -0.6
436,926 + BPHYT_RS01915 0.55 -0.5
437,038 + BPHYT_RS01915 0.64 -0.6
437,039 - BPHYT_RS01915 0.64 +0.6
437,039 - BPHYT_RS01915 0.64 +0.3
437,039 - BPHYT_RS01915 0.64 -0.4
437,039 - BPHYT_RS01915 0.64 -0.4
437,039 - BPHYT_RS01915 0.64 -0.2
437,039 - BPHYT_RS01915 0.64 -0.2
437,152 - BPHYT_RS01915 0.73 +0.1
437,152 - BPHYT_RS01915 0.73 -0.5
437,230 + BPHYT_RS01915 0.79 +0.9
437,258 + BPHYT_RS01915 0.82 -2.0
437,372 + -0.1
437,372 + +0.6
437,373 - +2.3
437,373 - -0.3
437,655 + BPHYT_RS01920 0.23 -2.8
437,656 - BPHYT_RS01920 0.23 -0.8
437,691 + BPHYT_RS01920 0.31 -1.0
437,691 + BPHYT_RS01920 0.31 -2.2
437,692 - BPHYT_RS01920 0.31 -1.2
437,716 - -0.3
437,797 + BPHYT_RS01920 0.54 -1.1
437,797 + BPHYT_RS01920 0.54 -0.8
437,798 - BPHYT_RS01920 0.54 -0.6
437,798 - BPHYT_RS01920 0.54 -0.9
437,798 - BPHYT_RS01920 0.54 -1.4
437,798 - BPHYT_RS01920 0.54 -3.3
437,798 - BPHYT_RS01920 0.54 -2.2
437,996 - -0.7
438,095 + +0.1
438,096 - -0.3
438,099 + +0.7
438,390 + BPHYT_RS01925 0.46 -0.4
438,391 - BPHYT_RS01925 0.47 +0.4
438,400 + BPHYT_RS01925 0.48 -0.9
438,400 + BPHYT_RS01925 0.48 +0.1
438,400 + BPHYT_RS01925 0.48 +1.0
438,400 + BPHYT_RS01925 0.48 -0.1
438,400 + BPHYT_RS01925 0.48 +1.1
438,400 + BPHYT_RS01925 0.48 -2.1
438,400 + BPHYT_RS01925 0.48 -1.6
438,401 - BPHYT_RS01925 0.48 -2.6
438,401 - BPHYT_RS01925 0.48 +0.5
438,401 - BPHYT_RS01925 0.48 +0.5
438,401 - BPHYT_RS01925 0.48 -0.1
438,401 - BPHYT_RS01925 0.48 -0.0
438,401 - BPHYT_RS01925 0.48 +0.3
438,401 - BPHYT_RS01925 0.48 -0.1
438,401 - BPHYT_RS01925 0.48 +0.7
438,401 - BPHYT_RS01925 0.48 -0.1
438,401 - BPHYT_RS01925 0.48 +0.5
438,402 + BPHYT_RS01925 0.48 -0.7
438,402 + BPHYT_RS01925 0.48 +1.4
438,402 + BPHYT_RS01925 0.48 +0.3
438,402 + BPHYT_RS01925 0.48 -0.3
438,402 + BPHYT_RS01925 0.48 +0.3
438,402 + BPHYT_RS01925 0.48 +0.7
438,402 + BPHYT_RS01925 0.48 -1.3
438,402 + BPHYT_RS01925 0.48 +0.1
438,403 - BPHYT_RS01925 0.48 +0.2
438,403 - BPHYT_RS01925 0.48 +0.9
438,403 - BPHYT_RS01925 0.48 +0.8
438,403 - BPHYT_RS01925 0.48 -0.1
438,403 - BPHYT_RS01925 0.48 +0.5
438,403 - BPHYT_RS01925 0.48 -0.6
438,403 - BPHYT_RS01925 0.48 -0.2
438,403 - BPHYT_RS01925 0.48 +0.2
438,403 - BPHYT_RS01925 0.48 +2.0
438,403 - BPHYT_RS01925 0.48 +1.0
438,403 - BPHYT_RS01925 0.48 -0.4
438,475 - BPHYT_RS01925 0.60 +0.0
438,475 - BPHYT_RS01925 0.60 -1.0
438,475 - BPHYT_RS01925 0.60 -0.2
438,636 + BPHYT_RS01925 0.85 +0.2
438,707 + -2.4
438,707 + -0.2
438,707 + -1.2
438,707 + +0.3
438,708 - +0.8
438,708 - -1.2
438,708 - -0.0
438,708 - -0.0
438,708 - -0.2
438,708 - -0.9
438,712 - -0.4
438,712 - +0.0
438,750 - -1.8
438,780 + -0.4
438,781 - -0.2
438,972 + BPHYT_RS01930 0.38 -0.4
438,972 + BPHYT_RS01930 0.38 +0.4
438,973 - BPHYT_RS01930 0.39 -0.3
438,989 + BPHYT_RS01930 0.41 -2.5
438,989 + BPHYT_RS01930 0.41 -0.1
438,989 + BPHYT_RS01930 0.41 -0.9
438,990 - BPHYT_RS01930 0.41 -0.0
438,990 - BPHYT_RS01930 0.41 -0.7
438,990 - BPHYT_RS01930 0.41 +0.3
438,990 - BPHYT_RS01930 0.41 -2.3

Or see this region's nucleotide sequence