Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01620 and BPHYT_RS01625 overlap by 4 nucleotides BPHYT_RS01625 and BPHYT_RS01630 are separated by 143 nucleotides BPHYT_RS01630 and BPHYT_RS01635 are separated by 9 nucleotides
BPHYT_RS01620: BPHYT_RS01620 - sensor histidine kinase, at 368,130 to 369,440
_RS01620
BPHYT_RS01625: BPHYT_RS01625 - chemotaxis protein CheY, at 369,437 to 369,979
_RS01625
BPHYT_RS01630: BPHYT_RS01630 - ATP-dependent protease ATPase subunit HslU, at 370,123 to 371,469
_RS01630
BPHYT_RS01635: BPHYT_RS01635 - ATP-dependent protease subunit HslV, at 371,479 to 372,015
_RS01635
Position (kb) 370
371
372 Strain fitness (log2 ratio) -2
-1
0
1
2 at 369.172 kb on + strand, within BPHYT_RS01620 at 369.172 kb on + strand, within BPHYT_RS01620 at 369.173 kb on - strand, within BPHYT_RS01620 at 369.173 kb on - strand, within BPHYT_RS01620 at 369.239 kb on + strand, within BPHYT_RS01620 at 369.239 kb on + strand, within BPHYT_RS01620 at 369.239 kb on + strand, within BPHYT_RS01620 at 369.240 kb on - strand, within BPHYT_RS01620 at 369.240 kb on - strand, within BPHYT_RS01620 at 369.267 kb on + strand, within BPHYT_RS01620 at 369.359 kb on + strand at 369.737 kb on + strand, within BPHYT_RS01625 at 369.737 kb on + strand, within BPHYT_RS01625 at 369.865 kb on + strand, within BPHYT_RS01625 at 369.866 kb on - strand, within BPHYT_RS01625 at 369.866 kb on - strand, within BPHYT_RS01625 at 369.866 kb on - strand, within BPHYT_RS01625 at 369.977 kb on + strand at 369.977 kb on + strand at 369.978 kb on - strand at 370.016 kb on - strand at 370.268 kb on + strand, within BPHYT_RS01630 at 370.392 kb on - strand, within BPHYT_RS01630 at 371.199 kb on - strand, within BPHYT_RS01630 at 371.695 kb on - strand, within BPHYT_RS01635 at 372.016 kb on - strand at 372.016 kb on - strand at 372.064 kb on - strand at 372.147 kb on + strand at 372.170 kb on - strand at 372.191 kb on + strand at 372.192 kb on - strand at 372.295 kb on + strand at 372.296 kb on - strand at 372.304 kb on + strand at 372.305 kb on - strand at 372.371 kb on + strand at 372.371 kb on + strand at 372.372 kb on - strand at 372.399 kb on - strand at 372.399 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 369,172 + BPHYT_RS01620 0.79 -1.5 369,172 + BPHYT_RS01620 0.79 -1.5 369,173 - BPHYT_RS01620 0.80 -2.2 369,173 - BPHYT_RS01620 0.80 -0.8 369,239 + BPHYT_RS01620 0.85 +1.5 369,239 + BPHYT_RS01620 0.85 -2.2 369,239 + BPHYT_RS01620 0.85 -1.6 369,240 - BPHYT_RS01620 0.85 +1.2 369,240 - BPHYT_RS01620 0.85 -0.9 369,267 + BPHYT_RS01620 0.87 +2.2 369,359 + -0.4 369,737 + BPHYT_RS01625 0.55 -1.6 369,737 + BPHYT_RS01625 0.55 -1.2 369,865 + BPHYT_RS01625 0.79 -1.9 369,866 - BPHYT_RS01625 0.79 -0.4 369,866 - BPHYT_RS01625 0.79 -2.2 369,866 - BPHYT_RS01625 0.79 -0.6 369,977 + -0.2 369,977 + -0.6 369,978 - +0.2 370,016 - +0.4 370,268 + BPHYT_RS01630 0.11 -0.4 370,392 - BPHYT_RS01630 0.20 +1.5 371,199 - BPHYT_RS01630 0.80 +0.3 371,695 - BPHYT_RS01635 0.40 +0.2 372,016 - -0.4 372,016 - +0.4 372,064 - +0.1 372,147 + -2.1 372,170 - +2.7 372,191 + -1.1 372,192 - -0.4 372,295 + -0.3 372,296 - -0.2 372,304 + -0.1 372,305 - +0.8 372,371 + -0.4 372,371 + -0.2 372,372 - +0.7 372,399 - +0.8 372,399 - -0.7
Or see this region's nucleotide sequence