Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01105 and BPHYT_RS01110 are separated by 114 nucleotides BPHYT_RS01110 and BPHYT_RS01115 are separated by 195 nucleotides BPHYT_RS01115 and BPHYT_RS01120 are separated by 139 nucleotides BPHYT_RS01120 and BPHYT_RS01125 are separated by 162 nucleotides
BPHYT_RS01105: BPHYT_RS01105 - hypothetical protein, at 255,197 to 255,916
_RS01105
BPHYT_RS01110: BPHYT_RS01110 - hypothetical protein, at 256,031 to 256,237
_RS01110
BPHYT_RS01115: BPHYT_RS01115 - hypothetical protein, at 256,433 to 256,678
_RS01115
BPHYT_RS01120: BPHYT_RS01120 - plasmid partitioning protein ParB, at 256,818 to 258,902
_RS01120
BPHYT_RS01125: BPHYT_RS01125 - integrase family protein, at 259,065 to 260,291
_RS01125
Position (kb) 256
257
258
259 Strain fitness (log2 ratio) -2
-1
0
1 at 256.566 kb on + strand, within BPHYT_RS01115 at 256.584 kb on + strand, within BPHYT_RS01115 at 256.617 kb on + strand, within BPHYT_RS01115 at 256.681 kb on + strand at 256.681 kb on + strand at 256.681 kb on + strand at 256.712 kb on - strand at 256.809 kb on + strand at 256.810 kb on - strand at 257.932 kb on - strand, within BPHYT_RS01120 at 258.010 kb on + strand, within BPHYT_RS01120 at 258.271 kb on + strand, within BPHYT_RS01120 at 258.410 kb on - strand, within BPHYT_RS01120 at 258.611 kb on - strand, within BPHYT_RS01120 at 258.778 kb on + strand at 259.007 kb on + strand at 259.007 kb on + strand at 259.008 kb on - strand at 259.014 kb on - strand at 259.080 kb on + strand at 259.080 kb on + strand at 259.110 kb on + strand at 259.325 kb on - strand, within BPHYT_RS01125 at 259.325 kb on - strand, within BPHYT_RS01125 at 259.390 kb on + strand, within BPHYT_RS01125 at 259.391 kb on - strand, within BPHYT_RS01125 at 259.411 kb on - strand, within BPHYT_RS01125 at 259.466 kb on + strand, within BPHYT_RS01125 at 259.489 kb on + strand, within BPHYT_RS01125 at 259.489 kb on + strand, within BPHYT_RS01125 at 259.551 kb on + strand, within BPHYT_RS01125 at 259.552 kb on - strand, within BPHYT_RS01125 at 259.603 kb on + strand, within BPHYT_RS01125 at 259.622 kb on - strand, within BPHYT_RS01125 at 259.638 kb on - strand, within BPHYT_RS01125 at 259.692 kb on + strand, within BPHYT_RS01125 at 259.734 kb on - strand, within BPHYT_RS01125 at 259.848 kb on - strand, within BPHYT_RS01125 at 259.848 kb on - strand, within BPHYT_RS01125
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 256,566 + BPHYT_RS01115 0.54 +0.4 256,584 + BPHYT_RS01115 0.61 +1.4 256,617 + BPHYT_RS01115 0.75 -0.1 256,681 + +0.2 256,681 + -0.5 256,681 + +0.0 256,712 - -0.2 256,809 + -0.4 256,810 - +1.5 257,932 - BPHYT_RS01120 0.53 -1.4 258,010 + BPHYT_RS01120 0.57 -0.3 258,271 + BPHYT_RS01120 0.70 -0.3 258,410 - BPHYT_RS01120 0.76 -1.7 258,611 - BPHYT_RS01120 0.86 -1.0 258,778 + +0.3 259,007 + +0.0 259,007 + +1.0 259,008 - +0.5 259,014 - -0.1 259,080 + +0.3 259,080 + +0.8 259,110 + -1.8 259,325 - BPHYT_RS01125 0.21 -0.9 259,325 - BPHYT_RS01125 0.21 +0.2 259,390 + BPHYT_RS01125 0.26 -0.4 259,391 - BPHYT_RS01125 0.27 +0.5 259,411 - BPHYT_RS01125 0.28 +0.2 259,466 + BPHYT_RS01125 0.33 +0.0 259,489 + BPHYT_RS01125 0.35 +0.4 259,489 + BPHYT_RS01125 0.35 +0.5 259,551 + BPHYT_RS01125 0.40 -0.3 259,552 - BPHYT_RS01125 0.40 +1.0 259,603 + BPHYT_RS01125 0.44 -1.3 259,622 - BPHYT_RS01125 0.45 -0.5 259,638 - BPHYT_RS01125 0.47 +0.6 259,692 + BPHYT_RS01125 0.51 +0.1 259,734 - BPHYT_RS01125 0.55 +0.9 259,848 - BPHYT_RS01125 0.64 -0.1 259,848 - BPHYT_RS01125 0.64 -0.2
Or see this region's nucleotide sequence