Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00980

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00975 and BPHYT_RS00980 are separated by 9 nucleotidesBPHYT_RS00980 and BPHYT_RS00985 are separated by 21 nucleotidesBPHYT_RS00985 and BPHYT_RS00990 overlap by 50 nucleotides BPHYT_RS00975: BPHYT_RS00975 - arsenic transporter, at 223,682 to 224,743 _RS00975 BPHYT_RS00980: BPHYT_RS00980 - GCN5 family acetyltransferase, at 224,753 to 225,199 _RS00980 BPHYT_RS00985: BPHYT_RS00985 - NADPH-dependent FMN reductase, at 225,221 to 225,985 _RS00985 BPHYT_RS00990: BPHYT_RS00990 - MFS transporter, at 225,936 to 227,198 _RS00990 Position (kb) 224 225 226Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 224.063 kb on + strand, within BPHYT_RS00975at 224.063 kb on + strand, within BPHYT_RS00975at 224.254 kb on + strand, within BPHYT_RS00975at 224.280 kb on - strand, within BPHYT_RS00975at 224.280 kb on - strand, within BPHYT_RS00975at 224.763 kb on + strandat 224.921 kb on + strand, within BPHYT_RS00980at 225.218 kb on - strandat 225.329 kb on + strand, within BPHYT_RS00985at 225.353 kb on + strand, within BPHYT_RS00985at 225.354 kb on - strand, within BPHYT_RS00985at 225.354 kb on - strand, within BPHYT_RS00985at 225.399 kb on + strand, within BPHYT_RS00985at 225.788 kb on + strand, within BPHYT_RS00985at 225.788 kb on + strand, within BPHYT_RS00985at 225.789 kb on - strand, within BPHYT_RS00985at 225.821 kb on + strand, within BPHYT_RS00985at 225.823 kb on + strand, within BPHYT_RS00985at 225.824 kb on - strand, within BPHYT_RS00985at 226.062 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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224,063 + BPHYT_RS00975 0.36 +0.1
224,063 + BPHYT_RS00975 0.36 -0.1
224,254 + BPHYT_RS00975 0.54 +0.5
224,280 - BPHYT_RS00975 0.56 +2.2
224,280 - BPHYT_RS00975 0.56 +0.6
224,763 + +0.2
224,921 + BPHYT_RS00980 0.38 +1.3
225,218 - +0.8
225,329 + BPHYT_RS00985 0.14 +1.2
225,353 + BPHYT_RS00985 0.17 -3.3
225,354 - BPHYT_RS00985 0.17 -0.5
225,354 - BPHYT_RS00985 0.17 -0.0
225,399 + BPHYT_RS00985 0.23 -0.1
225,788 + BPHYT_RS00985 0.74 -0.5
225,788 + BPHYT_RS00985 0.74 +0.0
225,789 - BPHYT_RS00985 0.74 +0.1
225,821 + BPHYT_RS00985 0.78 -1.2
225,823 + BPHYT_RS00985 0.79 +0.2
225,824 - BPHYT_RS00985 0.79 -0.9
226,062 + +0.2

Or see this region's nucleotide sequence