Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00700 and BPHYT_RS00705 overlap by 1 nucleotides BPHYT_RS00705 and BPHYT_RS00710 overlap by 14 nucleotides BPHYT_RS00710 and BPHYT_RS00715 are separated by 18 nucleotides
BPHYT_RS00700: BPHYT_RS00700 - branched-chain amino acid ABC transporter permease, at 163,772 to 164,854
_RS00700
BPHYT_RS00705: BPHYT_RS00705 - branched-chain amino acid ABC transporter substrate-binding protein, at 164,854 to 165,588
_RS00705
BPHYT_RS00710: BPHYT_RS00710 - branched-chain amino acid ABC transporter ATPase, at 165,575 to 166,318
_RS00710
BPHYT_RS00715: BPHYT_RS00715 - branched-chain amino acid ABC transporter substrate-binding protein, at 166,337 to 167,515
_RS00715
Position (kb) 164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 163.962 kb on - strand, within BPHYT_RS00700 at 163.962 kb on - strand, within BPHYT_RS00700 at 164.130 kb on - strand, within BPHYT_RS00700 at 164.340 kb on + strand, within BPHYT_RS00700 at 164.340 kb on + strand, within BPHYT_RS00700 at 164.387 kb on + strand, within BPHYT_RS00700 at 164.589 kb on + strand, within BPHYT_RS00700 at 164.589 kb on + strand, within BPHYT_RS00700 at 164.590 kb on - strand, within BPHYT_RS00700 at 164.672 kb on + strand, within BPHYT_RS00700 at 164.745 kb on + strand, within BPHYT_RS00700 at 165.040 kb on + strand, within BPHYT_RS00705 at 165.040 kb on + strand, within BPHYT_RS00705 at 165.041 kb on - strand, within BPHYT_RS00705 at 165.515 kb on - strand at 165.553 kb on + strand at 165.553 kb on + strand at 165.554 kb on - strand at 165.912 kb on + strand, within BPHYT_RS00710 at 165.912 kb on + strand, within BPHYT_RS00710 at 165.920 kb on + strand, within BPHYT_RS00710 at 166.262 kb on + strand at 166.262 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 163,962 - BPHYT_RS00700 0.18 -0.1 163,962 - BPHYT_RS00700 0.18 -1.4 164,130 - BPHYT_RS00700 0.33 +2.2 164,340 + BPHYT_RS00700 0.52 +1.1 164,340 + BPHYT_RS00700 0.52 +0.3 164,387 + BPHYT_RS00700 0.57 +0.2 164,589 + BPHYT_RS00700 0.75 -0.1 164,589 + BPHYT_RS00700 0.75 +0.4 164,590 - BPHYT_RS00700 0.76 -0.4 164,672 + BPHYT_RS00700 0.83 -0.8 164,745 + BPHYT_RS00700 0.90 -2.8 165,040 + BPHYT_RS00705 0.25 +0.4 165,040 + BPHYT_RS00705 0.25 +1.4 165,041 - BPHYT_RS00705 0.25 +1.6 165,515 - -0.4 165,553 + -1.0 165,553 + -0.3 165,554 - +0.6 165,912 + BPHYT_RS00710 0.45 +0.2 165,912 + BPHYT_RS00710 0.45 -0.2 165,920 + BPHYT_RS00710 0.46 -0.3 166,262 + +0.3 166,262 + +0.2
Or see this region's nucleotide sequence