Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00525

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00520 and BPHYT_RS00525 are separated by 369 nucleotidesBPHYT_RS00525 and BPHYT_RS00530 are separated by 598 nucleotidesBPHYT_RS00530 and BPHYT_RS00535 are separated by 50 nucleotides BPHYT_RS00520: BPHYT_RS00520 - glutamate--cysteine ligase, at 125,255 to 126,853 _RS00520 BPHYT_RS00525: BPHYT_RS00525 - aldehyde dismutase, at 127,223 to 128,437 _RS00525 BPHYT_RS00530: BPHYT_RS00530 - hypothetical protein, at 129,036 to 129,230 _RS00530 BPHYT_RS00535: BPHYT_RS00535 - AraC family transcriptional regulator, at 129,281 to 130,255 _RS00535 Position (kb) 127 128 129Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 126.279 kb on + strand, within BPHYT_RS00520at 126.280 kb on - strand, within BPHYT_RS00520at 126.307 kb on + strand, within BPHYT_RS00520at 126.307 kb on + strand, within BPHYT_RS00520at 126.308 kb on - strand, within BPHYT_RS00520at 126.309 kb on + strand, within BPHYT_RS00520at 126.310 kb on - strand, within BPHYT_RS00520at 126.310 kb on - strand, within BPHYT_RS00520at 126.399 kb on + strand, within BPHYT_RS00520at 126.399 kb on + strand, within BPHYT_RS00520at 126.399 kb on + strand, within BPHYT_RS00520at 126.427 kb on + strand, within BPHYT_RS00520at 126.495 kb on + strand, within BPHYT_RS00520at 126.495 kb on + strandat 126.495 kb on + strand, within BPHYT_RS00520at 126.496 kb on - strand, within BPHYT_RS00520at 126.496 kb on - strand, within BPHYT_RS00520at 126.496 kb on - strand, within BPHYT_RS00520at 126.848 kb on - strandat 126.849 kb on + strandat 126.850 kb on - strandat 126.850 kb on - strandat 126.883 kb on - strandat 126.924 kb on + strandat 126.996 kb on - strandat 127.022 kb on - strandat 127.101 kb on - strandat 127.185 kb on + strandat 127.217 kb on - strandat 127.257 kb on + strandat 127.257 kb on + strandat 127.290 kb on + strandat 127.290 kb on + strandat 127.348 kb on - strand, within BPHYT_RS00525at 127.512 kb on + strand, within BPHYT_RS00525at 127.552 kb on - strand, within BPHYT_RS00525at 127.632 kb on + strand, within BPHYT_RS00525at 127.632 kb on + strand, within BPHYT_RS00525at 127.864 kb on + strand, within BPHYT_RS00525at 127.864 kb on + strand, within BPHYT_RS00525at 127.864 kb on + strand, within BPHYT_RS00525at 127.864 kb on + strand, within BPHYT_RS00525at 127.864 kb on + strand, within BPHYT_RS00525at 127.864 kb on + strand, within BPHYT_RS00525at 127.865 kb on - strand, within BPHYT_RS00525at 127.866 kb on + strand, within BPHYT_RS00525at 127.867 kb on - strand, within BPHYT_RS00525at 128.019 kb on + strand, within BPHYT_RS00525at 128.020 kb on - strand, within BPHYT_RS00525at 128.089 kb on + strand, within BPHYT_RS00525at 128.089 kb on + strand, within BPHYT_RS00525at 128.272 kb on - strand, within BPHYT_RS00525at 128.465 kb on + strandat 128.524 kb on - strandat 128.721 kb on - strandat 128.946 kb on + strandat 128.947 kb on - strandat 129.098 kb on + strand, within BPHYT_RS00530at 129.147 kb on - strand, within BPHYT_RS00530at 129.233 kb on + strandat 129.233 kb on + strandat 129.234 kb on - strandat 129.252 kb on + strandat 129.252 kb on + strandat 129.253 kb on - strandat 129.298 kb on + strandat 129.307 kb on + strandat 129.351 kb on - strandat 129.351 kb on - strandat 129.351 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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126,279 + BPHYT_RS00520 0.64 +0.0
126,280 - BPHYT_RS00520 0.64 +0.9
126,307 + BPHYT_RS00520 0.66 -0.4
126,307 + BPHYT_RS00520 0.66 -0.4
126,308 - BPHYT_RS00520 0.66 +0.8
126,309 + BPHYT_RS00520 0.66 -0.3
126,310 - BPHYT_RS00520 0.66 +0.9
126,310 - BPHYT_RS00520 0.66 +0.3
126,399 + BPHYT_RS00520 0.72 -0.3
126,399 + BPHYT_RS00520 0.72 +0.2
126,399 + BPHYT_RS00520 0.72 +0.1
126,427 + BPHYT_RS00520 0.73 -0.9
126,495 + BPHYT_RS00520 0.78 +1.7
126,495 + -1.8
126,495 + BPHYT_RS00520 0.78 -0.3
126,496 - BPHYT_RS00520 0.78 +1.2
126,496 - BPHYT_RS00520 0.78 -0.3
126,496 - BPHYT_RS00520 0.78 -0.0
126,848 - +0.3
126,849 + +3.8
126,850 - -0.3
126,850 - -2.1
126,883 - +1.0
126,924 + -0.7
126,996 - -0.8
127,022 - -0.3
127,101 - +0.1
127,185 + -0.2
127,217 - +0.6
127,257 + -0.1
127,257 + +0.1
127,290 + -0.2
127,290 + -0.0
127,348 - BPHYT_RS00525 0.10 -1.0
127,512 + BPHYT_RS00525 0.24 +1.0
127,552 - BPHYT_RS00525 0.27 +0.8
127,632 + BPHYT_RS00525 0.34 +0.1
127,632 + BPHYT_RS00525 0.34 +0.6
127,864 + BPHYT_RS00525 0.53 +1.4
127,864 + BPHYT_RS00525 0.53 +1.9
127,864 + BPHYT_RS00525 0.53 +0.4
127,864 + BPHYT_RS00525 0.53 +1.8
127,864 + BPHYT_RS00525 0.53 +1.1
127,864 + BPHYT_RS00525 0.53 +1.6
127,865 - BPHYT_RS00525 0.53 +3.0
127,866 + BPHYT_RS00525 0.53 -0.3
127,867 - BPHYT_RS00525 0.53 -1.7
128,019 + BPHYT_RS00525 0.66 +0.6
128,020 - BPHYT_RS00525 0.66 +0.4
128,089 + BPHYT_RS00525 0.71 +0.7
128,089 + BPHYT_RS00525 0.71 -0.1
128,272 - BPHYT_RS00525 0.86 -0.1
128,465 + -0.7
128,524 - +1.2
128,721 - -0.7
128,946 + +0.1
128,947 - -0.3
129,098 + BPHYT_RS00530 0.32 -0.2
129,147 - BPHYT_RS00530 0.57 -0.8
129,233 + -0.5
129,233 + -0.2
129,234 - -0.1
129,252 + +0.2
129,252 + -0.6
129,253 - +0.8
129,298 + +0.6
129,307 + -1.5
129,351 - -0.1
129,351 - +0.3
129,351 - +0.8

Or see this region's nucleotide sequence