Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00335 and BPHYT_RS00340 are separated by 16 nucleotides BPHYT_RS00340 and BPHYT_RS00345 are separated by 223 nucleotides
BPHYT_RS00335: BPHYT_RS00335 - peptidase M19, at 84,101 to 85,099
_RS00335
BPHYT_RS00340: BPHYT_RS00340 - hypothetical protein, at 85,116 to 85,709
_RS00340
BPHYT_RS00345: BPHYT_RS00345 - MFS transporter, at 85,933 to 87,156
_RS00345
Position (kb) 85
86 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 84.232 kb on + strand, within BPHYT_RS00335 at 84.233 kb on - strand, within BPHYT_RS00335 at 84.237 kb on - strand, within BPHYT_RS00335 at 84.361 kb on + strand, within BPHYT_RS00335 at 84.458 kb on + strand, within BPHYT_RS00335 at 84.491 kb on + strand, within BPHYT_RS00335 at 84.491 kb on + strand, within BPHYT_RS00335 at 84.956 kb on - strand, within BPHYT_RS00335 at 84.986 kb on - strand, within BPHYT_RS00335 at 85.134 kb on - strand at 85.134 kb on - strand at 85.230 kb on - strand, within BPHYT_RS00340 at 85.466 kb on - strand, within BPHYT_RS00340 at 85.603 kb on - strand, within BPHYT_RS00340 at 85.777 kb on + strand at 85.777 kb on + strand at 85.778 kb on - strand at 85.786 kb on - strand at 85.927 kb on - strand at 85.934 kb on + strand at 85.951 kb on - strand at 85.951 kb on - strand at 86.086 kb on + strand, within BPHYT_RS00345 at 86.087 kb on - strand, within BPHYT_RS00345 at 86.110 kb on - strand, within BPHYT_RS00345 at 86.238 kb on + strand, within BPHYT_RS00345 at 86.239 kb on - strand, within BPHYT_RS00345 at 86.246 kb on + strand, within BPHYT_RS00345 at 86.259 kb on + strand, within BPHYT_RS00345 at 86.260 kb on - strand, within BPHYT_RS00345 at 86.332 kb on + strand, within BPHYT_RS00345 at 86.383 kb on + strand, within BPHYT_RS00345 at 86.443 kb on + strand, within BPHYT_RS00345 at 86.527 kb on + strand, within BPHYT_RS00345 at 86.527 kb on + strand, within BPHYT_RS00345 at 86.672 kb on - strand, within BPHYT_RS00345 at 86.672 kb on - strand, within BPHYT_RS00345 at 86.698 kb on + strand, within BPHYT_RS00345 at 86.698 kb on + strand, within BPHYT_RS00345
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 84,232 + BPHYT_RS00335 0.13 +0.7 84,233 - BPHYT_RS00335 0.13 -1.6 84,237 - BPHYT_RS00335 0.14 +1.3 84,361 + BPHYT_RS00335 0.26 +0.7 84,458 + BPHYT_RS00335 0.36 +1.9 84,491 + BPHYT_RS00335 0.39 +0.0 84,491 + BPHYT_RS00335 0.39 -2.8 84,956 - BPHYT_RS00335 0.86 +0.3 84,986 - BPHYT_RS00335 0.89 -0.6 85,134 - +0.1 85,134 - -0.0 85,230 - BPHYT_RS00340 0.19 +1.2 85,466 - BPHYT_RS00340 0.59 +0.4 85,603 - BPHYT_RS00340 0.82 +0.5 85,777 + +1.2 85,777 + +0.2 85,778 - +0.8 85,786 - +1.1 85,927 - -0.3 85,934 + -0.6 85,951 - +1.7 85,951 - +1.1 86,086 + BPHYT_RS00345 0.12 +2.6 86,087 - BPHYT_RS00345 0.13 -0.0 86,110 - BPHYT_RS00345 0.14 +1.4 86,238 + BPHYT_RS00345 0.25 +0.1 86,239 - BPHYT_RS00345 0.25 -0.6 86,246 + BPHYT_RS00345 0.26 -0.9 86,259 + BPHYT_RS00345 0.27 +0.4 86,260 - BPHYT_RS00345 0.27 +1.8 86,332 + BPHYT_RS00345 0.33 +1.1 86,383 + BPHYT_RS00345 0.37 +1.1 86,443 + BPHYT_RS00345 0.42 +0.0 86,527 + BPHYT_RS00345 0.49 -0.5 86,527 + BPHYT_RS00345 0.49 -0.5 86,672 - BPHYT_RS00345 0.60 -1.8 86,672 - BPHYT_RS00345 0.60 +0.5 86,698 + BPHYT_RS00345 0.62 -1.0 86,698 + BPHYT_RS00345 0.62 -0.8
Or see this region's nucleotide sequence