Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00150 and BPHYT_RS00155 are separated by 302 nucleotides BPHYT_RS00155 and BPHYT_RS00160 are separated by 124 nucleotides
BPHYT_RS00150: BPHYT_RS00150 - DEAD/DEAH box helicase, at 40,276 to 41,679
_RS00150
BPHYT_RS00155: BPHYT_RS00155 - aminotransferase, at 41,982 to 43,136
_RS00155
BPHYT_RS00160: BPHYT_RS00160 - ABC transporter substrate-binding protein, at 43,261 to 44,049
_RS00160
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 41.287 kb on - strand, within BPHYT_RS00150 at 41.575 kb on + strand at 41.576 kb on - strand at 41.576 kb on - strand at 41.576 kb on - strand at 41.576 kb on - strand at 41.733 kb on - strand at 41.740 kb on - strand at 41.902 kb on - strand at 41.975 kb on + strand at 41.981 kb on + strand at 41.982 kb on - strand at 42.022 kb on + strand at 42.228 kb on + strand, within BPHYT_RS00155 at 42.291 kb on + strand, within BPHYT_RS00155 at 42.337 kb on - strand, within BPHYT_RS00155 at 42.337 kb on - strand, within BPHYT_RS00155 at 42.360 kb on + strand, within BPHYT_RS00155 at 42.361 kb on - strand, within BPHYT_RS00155 at 42.591 kb on + strand, within BPHYT_RS00155 at 42.739 kb on + strand, within BPHYT_RS00155 at 42.801 kb on + strand, within BPHYT_RS00155 at 42.838 kb on - strand, within BPHYT_RS00155 at 42.838 kb on - strand, within BPHYT_RS00155 at 42.858 kb on + strand, within BPHYT_RS00155 at 42.858 kb on + strand, within BPHYT_RS00155 at 42.858 kb on + strand, within BPHYT_RS00155 at 43.044 kb on - strand at 43.052 kb on + strand at 43.140 kb on + strand at 43.141 kb on - strand at 43.173 kb on + strand at 43.173 kb on + strand at 43.185 kb on + strand at 43.185 kb on + strand at 43.185 kb on + strand at 43.456 kb on - strand, within BPHYT_RS00160 at 43.768 kb on + strand, within BPHYT_RS00160 at 43.768 kb on + strand, within BPHYT_RS00160 at 44.047 kb on + strand at 44.048 kb on - strand at 44.048 kb on - strand at 44.059 kb on + strand at 44.059 kb on + strand at 44.129 kb on + strand at 44.130 kb on - strand at 44.133 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 41,287 - BPHYT_RS00150 0.72 -1.8 41,575 + +0.2 41,576 - +1.1 41,576 - -1.0 41,576 - -1.4 41,576 - +2.6 41,733 - -0.6 41,740 - -0.0 41,902 - -1.7 41,975 + -0.6 41,981 + -0.9 41,982 - -2.1 42,022 + -0.9 42,228 + BPHYT_RS00155 0.21 +0.2 42,291 + BPHYT_RS00155 0.27 -1.0 42,337 - BPHYT_RS00155 0.31 +0.8 42,337 - BPHYT_RS00155 0.31 +0.5 42,360 + BPHYT_RS00155 0.33 +0.1 42,361 - BPHYT_RS00155 0.33 +1.3 42,591 + BPHYT_RS00155 0.53 -0.6 42,739 + BPHYT_RS00155 0.66 +0.9 42,801 + BPHYT_RS00155 0.71 +0.6 42,838 - BPHYT_RS00155 0.74 -0.3 42,838 - BPHYT_RS00155 0.74 +0.7 42,858 + BPHYT_RS00155 0.76 +0.1 42,858 + BPHYT_RS00155 0.76 -0.5 42,858 + BPHYT_RS00155 0.76 +0.6 43,044 - +0.4 43,052 + -1.0 43,140 + +0.4 43,141 - +0.3 43,173 + -0.4 43,173 + -0.8 43,185 + -3.6 43,185 + -1.0 43,185 + -0.3 43,456 - BPHYT_RS00160 0.25 +0.2 43,768 + BPHYT_RS00160 0.64 +0.1 43,768 + BPHYT_RS00160 0.64 +1.3 44,047 + +0.3 44,048 - +0.1 44,048 - +0.2 44,059 + +0.6 44,059 + -1.2 44,129 + +0.1 44,130 - +0.6 44,133 + +0.4
Or see this region's nucleotide sequence