Strain Fitness in Sinorhizobium meliloti 1021 around SMc04383

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04882 and SMc04383 are separated by 113 nucleotidesSMc04383 and SMc04384 are separated by 10 nucleotides SMc04882: SMc04882 - transcriptional regulator, at 3,582,240 to 3,583,133 SMc04882 SMc04383: SMc04383 - putative hydrolase, required for lysine catabolism (from data), at 3,583,247 to 3,584,647 SMc04383 SMc04384: SMc04384 - (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data), at 3,584,658 to 3,586,079 SMc04384 Position (kb) 3583 3584 3585Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3582.320 kb on - strandat 3582.320 kb on - strandat 3582.322 kb on + strandat 3582.322 kb on + strandat 3582.322 kb on + strandat 3582.323 kb on - strandat 3582.323 kb on - strandat 3582.323 kb on - strandat 3582.406 kb on - strand, within SMc04882at 3582.594 kb on + strand, within SMc04882at 3582.647 kb on - strand, within SMc04882at 3582.647 kb on - strand, within SMc04882at 3583.258 kb on + strandat 3583.258 kb on + strandat 3583.337 kb on + strandat 3583.527 kb on - strand, within SMc04383at 3583.539 kb on - strand, within SMc04383at 3583.539 kb on - strand, within SMc04383at 3583.541 kb on + strand, within SMc04383at 3583.541 kb on + strand, within SMc04383at 3583.717 kb on + strand, within SMc04383at 3583.853 kb on + strand, within SMc04383at 3583.915 kb on + strand, within SMc04383at 3584.164 kb on - strand, within SMc04383at 3584.250 kb on - strand, within SMc04383at 3584.433 kb on - strand, within SMc04383at 3584.464 kb on + strand, within SMc04383at 3584.576 kb on + strandat 3584.576 kb on + strandat 3584.623 kb on + strandat 3584.648 kb on + strandat 3584.873 kb on + strand, within SMc04384at 3585.123 kb on + strand, within SMc04384at 3585.501 kb on + strand, within SMc04384at 3585.592 kb on + strand, within SMc04384at 3585.593 kb on - strand, within SMc04384at 3585.610 kb on + strand, within SMc04384at 3585.610 kb on + strand, within SMc04384at 3585.610 kb on + strand, within SMc04384

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,582,320 - +2.2
3,582,320 - +1.3
3,582,322 + +1.7
3,582,322 + +1.2
3,582,322 + +2.1
3,582,323 - +0.0
3,582,323 - -2.5
3,582,323 - -0.4
3,582,406 - SMc04882 0.19 -3.7
3,582,594 + SMc04882 0.40 -0.4
3,582,647 - SMc04882 0.46 +0.3
3,582,647 - SMc04882 0.46 -0.2
3,583,258 + +2.4
3,583,258 + +0.2
3,583,337 + -0.6
3,583,527 - SMc04383 0.20 -0.2
3,583,539 - SMc04383 0.21 -1.4
3,583,539 - SMc04383 0.21 -2.2
3,583,541 + SMc04383 0.21 -2.4
3,583,541 + SMc04383 0.21 -1.9
3,583,717 + SMc04383 0.34 -2.5
3,583,853 + SMc04383 0.43 -1.5
3,583,915 + SMc04383 0.48 -2.7
3,584,164 - SMc04383 0.65 +2.2
3,584,250 - SMc04383 0.72 -2.1
3,584,433 - SMc04383 0.85 -1.2
3,584,464 + SMc04383 0.87 +1.2
3,584,576 + -1.0
3,584,576 + +1.0
3,584,623 + -1.5
3,584,648 + -0.6
3,584,873 + SMc04384 0.15 +0.4
3,585,123 + SMc04384 0.33 -0.2
3,585,501 + SMc04384 0.59 -1.5
3,585,592 + SMc04384 0.66 +1.0
3,585,593 - SMc04384 0.66 -2.3
3,585,610 + SMc04384 0.67 -0.6
3,585,610 + SMc04384 0.67 -0.3
3,585,610 + SMc04384 0.67 -3.7

Or see this region's nucleotide sequence